AJ
Andras Jakab
eess.IVcs.CVMagnetic Resonance ImagingBrainneurosciencecs.LGHeart Defects, CongenitalImage Processing, Computer-AssistedConnectomeNeuroimaging
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Stefan Bauer, Markus Rempfler +422
1 version
Preprints & journals
104 papers in the corpus · 2010–2026Stable Thalamic Topography Across Perinatal Development: a Diffusion MRI Study.42862397 · Ji, Hui, Wu, Zhexin, Speckert, Anna et al.2026 · 0 citationsBrain topography. 2026;39(6)
Mapping the human thalamus: a historical review of thalamic atlases from histology to modern neuroanatomy.42682949 · Antonios, Michelle, Szekely, Gabor, Karayannis, Theofanis et al.2026 · 0 citationsFrontiers in neuroanatomy. 2026;20:1927141
Implicit representations are dead. Long live explicit primitives!2608.10001v1 · Nil Stolt-Ans'o, Maik Dannecker, Wenqi Huang et al.2026 · 0 citationsarXiv
Developmental brain age gap in prematurity and postnatally emerging delay in congenital heart disease10.64898/2026.04.01.26349523v1 · Kaandorp, M. P. T., Payette, K., Speckert, A. et al.2026 · 0 citationsmedRxiv
A Comparative Study of IVIM-MRI Fitting Techniques in Glioma Grading: Conventional, Bayesian, and Voxel-Wise and Spatially-Aware Deep Learning Approaches.41913432 · Kaandorp, Misha P T, Jakab, Andras, Federau, Christian et al.2026 · 3 citationsJournal of magnetic resonance imaging : JMRI. 2026;64(1):184-200
Listening Without the Noise: Near-Silent Looping Star fMRI Reveals Neural Processing of Degraded Speech.41821155 · Ritter, Christopher J, Hüsser, Alejandra M, Jakab, András et al.2026 · 0 citationsHuman brain mapping. 2026;47(4):e70501
Enhancing efficiency in pediatric brain tumor segmentation using a pathologically diverse single-center clinical dataset.41890357 · Piffer, Arianna, Buchner, Josef Alois, Gennari, Antonio Giulio et al.2026 · 2 citationsNeuro-oncology advances. 2026;8(1):vdag024
The 2024 Brain Tumor Segmentation Challenge Meningioma Radiotherapy (BraTS-MEN-RT) dataset.41593091 · LaBella, Dominic, Schumacher, Katherine, Mix, Michael et al.2026 · 2 citationsScientific data. 2026;13(1)
Towards contrast- and pathology-agnostic clinical fetal brain MRI segmentation using SynthSeg.41548822 · Shang, Ziyao, Kaandorp, Misha, Payette, Kelly et al.2026 · 3 citationsNeuroImage. 2026;327:121729
Advances in automated fetal brain MRI segmentation and biometry: Insights from the FeTA 2024 challenge.41564637 · Zalevskyi, Vladyslav, Sanchez, Thomas, Kaandorp, Misha et al.2026 · 6 citationsMedical image analysis. 2026;109:103941
Developmental Brain Age Estimation From MRI Data: A Systematic Review of Deep Learning Approaches and Open Datasets.41414873 · Asma Ull, Hosna, Kaandorp, Misha P T, Jakab, Andras et al.2026 · 0 citationsJournal of magnetic resonance imaging : JMRI. 2026;63(3):650-671
Serial cerebral magnetic resonance imaging before and after birth in patients with complex congenital heart disease - a prospective, multicentre observational study.41397378 · Knirsch, Walter, De Silvestro, Alexandra, Steger, Celine et al.2025 · 1 citationSwiss medical weekly. 2025;155:4466
Atlas-independent brain connectome analysis at voxel-level granularity: graph convolutional networks for etiology classification in newborns.41177470 · Speckert, Anna, Gianinazzi, Lukas, Kollmorgen, Sepp et al.2025 · 1 citationNeuroImage. 2025;322:121568
Lung volume segmentation in fetal MRI: super-resolution reconstructions improve inter-rater reliability.40926155 · Payette, Kelly, Geiger, Julia, Zellner, Michael et al.2025 · 3 citationsEuropean radiology experimental. 2025;9(1):88
Enhancing efficiency in paediatric brain tumour segmentation using a pathologically diverse single-center clinical dataset2507.22152v2 · A. Piffer, J. A. Buchner, A. G. Gennari et al.2025 · 0 citationsarXiv
Towards fair decentralized benchmarking of healthcare AI algorithms with the Federated Tumor Segmentation (FeTS) challenge.40628696 · Zenk, Maximilian, Baid, Ujjwal, Pati, Sarthak et al.2025 · 69 citationsNature communications. 2025;16(1):6274
Placental histology, perioperative brain development, and neurodevelopmental outcome at 1 year of age in patients undergoing neonatal cardiac surgery-is there an association?40520938 · Steger, Céline, Boegeholz, Alexander, Latal, Beatrice et al.2025 · 4 citationsFrontiers in cardiovascular medicine. 2025;12:1556289
Automatic quality control in multi-centric fetal brain MRI super-resolution reconstruction2503.10156v4 · Thomas Sanchez, Vladyslav Zalevskyi, Angeline Mihailov et al.2025 · 4 citationsarXiv
Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results.39475746 · Payette, Kelly, Steger, Celine, Licandro, Roxane et al.2025 · 23 citationsIEEE transactions on medical imaging. 2025;44(3):1257-1272
Pathological MRI Segmentation by Synthetic Pathological Data Generation in Fetuses and Neonates2501.19338v1 · Misha P.T Kaandorp, Damola Agbelese, Hosna Asma-ull et al.2025 · 1 citationarXiv
Altered Connectome Topology in Newborns at Risk for Cognitive Developmental Delay: A Cross-Etiologic Study.39791277 · Speckert, Anna, Payette, Kelly, Knirsch, Walter et al.2025 · 2 citationsHuman brain mapping. 2025;46(1):e70084
Prenatal assessment of brain malformations on neuroimaging: an expert panel review.39054600 · Pogledic, Ivana, Mankad, Kshitij, Severino, Mariasavina et al.2024 · 20 citationsBrain : a journal of neurology. 2024;147(12):3982-4002
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn).37608932 · Li, Hongwei Bran, Conte, Gian Marco, Hu, Qingqiao et al.2026 · 21 citationsArXiv. 2024
[Formula: see text] Learning from those who thrive: protective factors and neuroimaging markers in adolescents with complex congenital heart disease and with a favorable neurodevelopmental profile.39450714 · Ehrler, Melanie, O'Gorman, Ruth, Wehrle, Flavia Maria et al.2025 · 5 citationsChild neuropsychology : a journal on normal and abnormal development in childhood and adolescence. 2025;31(4):613-634
The cumulative impact of clinical risk on brain networks and associations with executive function impairments in adolescents with congenital heart disease.39377685 · Ehrler, Melanie, Speckert, Anna, Kretschmar, Oliver et al.2024 · 9 citationsHuman brain mapping. 2024;45(14):e70028
Developmental trajectory of thalamus topography during the late preterm and perinatal period in normal development, after premature birth and in congenital heart defects10.1101/2024.08.27.608544v1 · Ji, H., Wu, Z., Speckert, A. et al.2024 · 3 citationsbioRxiv
FetMRQC: A robust quality control system for multi-centric fetal brain MRI.39053168 · Sanchez, Thomas, Esteban, Oscar, Gomez, Yvan et al.2024 · 19 citationsMedical image analysis. 2024;97:103282
Assessing data quality on fetal brain MRI reconstruction: a multi-site and multi-rater study10.1101/2024.06.28.601169v2 · Sanchez, T., Mihailov, A., Gomez, Y. et al.2024 · 7 citationsbioRxiv
Increased [18F]FDG uptake in the infarcted myocardial area displayed by combined PET/CMR correlates with snRNA-seq-detected inflammatory cell invasion.38922408 · Lukovic, Dominika, Gyöngyösi, Mariann, Pavo, Imre J et al.2024 · 5 citationsBasic research in cardiology. 2024;119(5):807-829
Inhibition abilities and functional brain connectivity in school-aged term-born and preterm-born children.38898110 · Disselhoff, Vera, Jakab, Andras, Latal, Beatrice et al.2025 · 1 citationPediatric research. 2025;97(1):315-324
OSBA: An open neonatal neuroimaging atlas and template for spina bifida aperta10.1101/2024.06.04.597318v1 · Speckert, A., Ji, H., Payette, K. M. et al.2024 · 2 citationsbioRxiv
Analysis of the 2024 BraTS Meningioma Radiotherapy Planning Automated Segmentation Challenge2405.18383v3 · Dominic LaBella, Valeriia Abramova, Mehdi Astaraki et al.2024 · 8 citationsarXiv
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge2405.09787v2 · Dominic LaBella, Ujjwal Baid, Omaditya Khanna et al.2024 · 11 citationsMachine.Learning.for.Biomedical.Imaging. 3 (2025)
A Dempster-Shafer Approach to Trustworthy AI With Application to Fetal Brain MRI Segmentation.38198270 · Fidon, Lucas, Aertsen, Michael, Kofler, Florian et al.2024 · 42 citationsIEEE transactions on pattern analysis and machine intelligence. 2024;46(5):3784-3795
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge2405.18435v2 · Hongwei Bran Li, Fernando Navarro, Ivan Ezhov et al.2024 · 6 citationsarXiv
Effects of hemodynamic alterations and oxygen saturation on cerebral perfusion in congenital heart disease.38438551 · De Silvestro, Alexandra, Natalucci, Giancarlo, Feldmann, Maria et al.2024 · 17 citationsPediatric research. 2024;96(4):990-998
Thalamic connectivity topography in newborns with spina bifida: association with neurological functional level but not developmental outcome at 2 years.37991274 · Ji, Hui, Payette, Kelly, Speckert, Anna et al.2024 · 1 citationCerebral cortex (New York, N.Y. : 1991). 2024;34(1)
Characterization of dynamic patterns of human fetal to neonatal brain asymmetry with deformation-based morphometry.38130698 · Steger, Céline, Moatti, Charles, Payette, Kelly et al.2023 · 2 citationsFrontiers in neuroscience. 2023;17:1252850
Thalamic connectivity topography in spina bifida newborns is linked to functional lesion level10.1101/2023.06.22.23291762v1 · Ji, H., Payette, K., Speckert, A. et al.2023 · 0 citationsmedRxiv
The Brain Tumor Segmentation (BraTS) Challenge: Local Synthesis of Healthy Brain Tissue via Inpainting2305.08992v3 · Florian Kofler, Felix Meissen, Felix Steinbauer et al.2023 · 5 citationsarXiv
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn)2305.09011v6 · Hongwei Bran Li, Gian Marco Conte, Qingqiao Hu et al.2023 · 21 citationsarXiv
Fetal brain tissue annotation and segmentation challenge results.37267773 · Payette, Kelly, Li, Hongwei Bran, de Dumast, Priscille et al.2023 · 67 citationsMedical image analysis. 2023;88:102833
Cerebral desaturation during neonatal congenital heart surgery is associated with perioperative brain structure alterations but not with neurodevelopmental outcome at 1 year.35373833 · De Silvestro, Alexandra A, Krüger, Bernard, Steger, Céline et al.2022 · 18 citationsEuropean journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery. 2022;62(5)
Synthesis of realistic fetal MRI with conditional Generative Adversarial Networks2209.09696v1 · Marina Fernandez Garcia, Rodrigo Gonzalez Laiz, Hui Ji et al.2022 · 1 citationarXiv
Slice estimation in diffusion MRI of neonatal and fetal brains in image and spherical harmonics domains using autoencoders2208.13328v1 · Hamza Kebiri, Gabriel Girard, Yasser Aleman-Gomez et al.2022 · 1 citationarXiv
Neurometabolic changes in neonates with congenital heart defects and their relation to neurodevelopmental outcome.35995938 · Steger, Céline, Feldmann, Maria, Borns, Julia et al.2023 · 8 citationsPediatric research. 2023;93(6):1642-1650
Perioperative Course and Socioeconomic Status Predict Long-Term Neurodevelopment Better Than Perioperative Conventional Neuroimaging in Children with Congenital Heart Disease.35948191 · Neukomm, Astrid, Ehrler, Melanie, Feldmann, Maria et al.2022 · 33 citationsThe Journal of pediatrics. 2022;251:140-148.e3
QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results.36998700 · Mehta, Raghav, Filos, Angelos, Baid, Ujjwal et al.2024 · 61 citationsThe journal of machine learning for biomedical imaging. 2022;2022
A Fetal Brain magnetic resonance Acquisition Numerical phantom (FaBiAN).35606398 · Lajous, Hélène, Roy, Christopher W, Hilbert, Tom et al.2022 · 25 citationsScientific reports. 2022;12(1):8682
Through-Plane Super-Resolution With Autoencoders in Diffusion Magnetic Resonance Imaging of the Developing Human Brain.35585848 · Kebiri, Hamza, Canales-Rodríguez, Erick J, Lajous, Hélène et al.2023 · 6 citationsFrontiers in neurology. 2022;13:827816
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