PT
Paul Tafforeau
FossilsBiological EvolutionSynchrotronsTomography, X-Ray ComputedHominidaeneurosciencePhylogenycs.CVDentitionevolutionary biology
On Valency
published · living versionsW_eve3rarn·v1 · currentpublished
PyHST2: an hybrid distributed code for high speed tomographic reconstruction with iterative reconstruction and a priori knowledge capabilities
with Alessandro Mirone, Emmanuelle Gouillart, Emmanuel Brun, Jerome Kieffer
1 version
W_fja42aqk·v1published
Preprints & journals
174 papers in the corpus · 2003–2026BigHeart: Mapping connectivity in the adult human heart at the micron scale10.64898/2026.09.11.750845v1 · Brunet, J., Cook, A. C., Szmul, A. et al.2026 · 0 citationsbioRxiv
LoRCA: LoRA Cycle Adaptation for Histology to HiP-CT Translation with DINOv32608.10002v1 · Yang Zhou, Edoardo Occhipinti, Banboye Kidzeru Elvis et al.2026 · 0 citationsarXiv
Complete virtual unwrapping and reading of a rolled Herculaneum papyrus2606.29085v1 · Giorgio Angelotti, Stephen Parsons, Federica Nicolardi et al.2026 · 0 citationsarXivon Valency
Fast eikonal phase retrieval for high-throughput beamlines.42319804 · Mirone, Alessandro, Urban, Theresa, Brunet, Joseph et al.2026 · 0 citationsJournal of synchrotron radiation. 2026;33(Pt 4):1169-1179
Evolution of hierarchical phase-contrast tomography on the European Synchrotron beamlines BM05 and BM18: a whole adult human brain imaging case study.42319807 · Dejea, Hector, Brunet, Joseph, Urban, Theresa et al.2026 · 2 citationsJournal of synchrotron radiation. 2026;33(Pt 4):1180-1189
Altered Myocardial Structure in Post-natal Tetralogy of Fallot: A Substrate for Interpretation of Ventricular Function and Dysfunction?10.64898/2026.04.29.721688v2 · Sabarigirivasan, V., Brunet, J., Dejea, H. et al.2026 · 0 citationsbioRxiv
Triply-Twinned Metamaterials: Unraveling the Mechanics and Failure Pathways Through High-Resolution XCT.42046428 · McArthur, David, Maddison, George, Vijayakumar, Jaianth et al.2026 · 1 citationAdvanced materials (Deerfield Beach, Fla.). 2026;38(31):e16173
Hierarchical X-ray microscopy and mesoscopic diffusion MRI in the same brain reveal the human connectome across scales10.64898/2026.04.02.716198v1 · Chourrout, M., Gong, T., Schalek, R. et al.2026 · 0 citationsbioRxiv
Bridging the microstructural gap in human connectomics using hierarchical phase-contrast tomography as a reference for diffusion MRI in the human brain.41993538 · Wanjau, Eric, Chourrout, Matthieu, Maffei, Chiara et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Neuroanatomy of the clitoris10.64898/2026.03.18.712572v1 · Lee, J. Y., Alblas, D., Szmul, A. et al.2026 · 0 citationsbioRxiv
The heterogeneous nature of atrioventricular conduction tissues in tetralogy of Fallot demonstrated by hierarchical phase-contrast tomography.42306267 · Sabarigirivasan, Vaishnavi, Brunet, Joseph, Dejea, Hector et al.2026 · 1 citationJTCVS structural and endovascular. 2026;10:100111
Multiscale segmentation using hierarchical phase-contrast tomography and deep learning.41628266 · Zhou, Yang, Aslani, Shahab, Javanmardi, Yousef et al.2026 · 4 citationsPLoS computational biology. 2026;22(2):e1013923
The Extremely Brilliant Brain: An Isotropic Microscale Human Brain Dataset.41659498 · Chourrout, Matthieu, Keenlyside, Andrew, Wanjau, Eric et al.2026 · 2 citationsbioRxiv : the preprint server for biology. 2026
Hierarchical Phase-Contrast Tomography Imaging: Applicability in biomedical research10.64898/2026.01.15.699614v1 · Docter, D., Brunet, J., Sabarigirivasan, V. et al.2026 · 1 citationbioRxiv
A whole-organ multi-scale in silico framework for human kidney haemodynamics informed by hierarchical phase-contrast tomography10.64898/2025.12.30.696985v1 · Javanmardi, Y., Lyu, M., Zhou, Y. et al.2025 · 0 citationsbioRxiv
Resolving near-micron scale features within a whole sheep head using Hierarchical Phase-Contrast Tomography10.64898/2025.12.15.694379v1 · Urban, T., Brunet, J., Didziokas, M. et al.2025 · 0 citationsbioRxiv
In situ profiling of nanoscale displacements uncovers mechano-architectural predictors of osteoarthritis emergence10.64898/2025.12.04.692296v1 · Sharma, A., Evans, L. A., Bourne, L. E. et al.2025 · 0 citationsbioRxiv
The Heterogeneous Nature of Atrioventricular Conduction Tissues in Tetralogy of Fallot demonstrated by Hierarchical Phase-contrast Tomography - redefining the anatomic substrate10.64898/2025.12.04.692356v1 · Sabarigirivasan, V., Brunet, J., Dejea, H. et al.2025 · 0 citationsbioRxiv
Multispectral CT Denoising via Simulation-Trained Deep Learning: Experimental Results at the ESRF BM182509.08528v1 · Peter Ganz, Steffen Kieß, Guangpu Yang et al.2025 · 0 citationsarXiv
Mapping the arterial vascular network in an intact human kidney using hierarchical phase-contrast tomography.40903539 · Rahmani, Shahrokh, Jafree, Daniyal J, Lee, Peter D et al.2025 · 8 citationsNpj imaging. 2025;3(1):39
Evidence for deliberate burial of the dead by Homo naledi.40888484 · Berger, Lee R, Makhubela, Tebogo Vincent, Molopyane, Keneiloe et al.2025 · 26 citationseLife. 2025;12
The Human Organ Atlas.40766351 · Walsh, Claire L, Brunet, Joseph, Stansby, David et al.2026 · 7 citationsbioRxiv : the preprint server for biology. 2025
Eikonal Phase Retrieval: unleashing the potential of fourth-generation sources for enhanced propagation-based tomography on biological samples.40673709 · Mirone, Alessandro, Brunet, Joseph, Urban, Theresa et al.2025 · 7 citationsJournal of synchrotron radiation. 2025;32(Pt 5):1291-1301
3D imaging of the human temporal bone by X-ray phase-contrast tomography.40604300 · Schaeper, Jannis J, Tafforeau, Paul, Kampshoff, Christoph A et al.2026 · 4 citationsNpj imaging. 2025;3(1):21
3D multiscale characterization of the human placenta: Bridging anatomy and histology by X-ray phase-contrast tomography.39831153 · Reichmann, Jakob, Schnurpfeil, Anne, Mittelstädt, Sylvia et al.2025 · 13 citationsPNAS nexus. 2025;4(1):pgae583
Imaging Three-Dimensional Airway Morphology in Congenital Pulmonary Airway Malformation Using Hierarchical Phase-Contrast Tomography.39028569 · Verleden, Stijn E, Urban, Theresa, Brunet, Joseph et al.2024 · 7 citationsAmerican journal of respiratory and critical care medicine. 2024;210(11):e16-e17
Microstructure and development of the dermal ossicles of Antarctopelta oliveroi (Dinosauria, Ankylosauria): A complex morphogenetic system deciphered through three-dimensional X-ray microtomography.39497679 · Sanchez, Sophie, de Ricqlès, Armand, Ponstein, Jasper et al.2025 · 1 citationJournal of anatomy. 2025;247(3-4):665-681
Benefits of front coating crystalline scintillator screens for phase-contrast synchrotron micro-tomography.39573479 · Diez, Matthias, Saeidnezhad, Nasila, Tafforeau, Paul et al.2024 · 2 citationsOptics express. 2024;32(23):41790-41803
Dental evidence for extended growth in early Homo from Dmanisi.39537931 · Zollikofer, Christoph P E, Beyrand, Vincent, Lordkipanidze, David et al.2024 · 20 citationsNature. 2024;635(8040):906-911
Micro to macro scale anatomical analysis of the human hippocampal arteries with synchrotron hierarchical phase-contrast tomography.39225863 · Bellier, Alexandre, Tafforeau, P, Bouziane, A et al.2024 · 3 citationsSurgical and radiologic anatomy : SRA. 2024;46(11):1753-1760
Harnessing Advanced Machine Learning Techniques for Microscopic Vessel Segmentation in Pulmonary Fibrosis Using Novel Hierarchical Phase-Contrast Tomography Images.39965755 · Vasudev, Pardeep, Azimbagirad, Mehran, Aslani, Shahab et al.2025 · 3 citationsMethods of information in medicine. 2024;63(3-04):97-108
Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys.39253466 · Jain, Yashvardhan, Walsh, Claire L, Yagis, Ekin et al.2026 · 10 citationsbioRxiv : the preprint server for biology. 2024
Deep Learning for 3D Vascular Segmentation in Phase Contrast Tomography.39070623 · Yagis, Ekin, Aslani, Shahab, Jain, Yashvardhan et al.2025 · 35 citationsResearch square. 2024
Mapping the blood vasculature in an intact human kidney using hierarchical phase-contrast tomography.37034801 · Rahmani, Shahrokh, Jafree, Daniyal J, Lee, Peter D et al.2025 · 7 citationsbioRxiv : the preprint server for biology. 2024
New hominin dental remains from Olduvai Gorge (Tanzania).38971116 · Riga, Alessandro, Davies, Thomas W, Azzarà, Beatrice et al.2024 · 1 citationJournal of human evolution. 2024;193:103556
Multidimensional Analysis of the Adult Human Heart in Health and Disease Using Hierarchical Phase-Contrast Tomography.39012246 · Brunet, Joseph, Cook, Andrew C, Walsh, Claire L et al.2024 · 41 citationsRadiology. 2024;312(1):e232731
A closer look at high-energy X-ray-induced bubble formation during soft tissue imaging.38682274 · Xian, R Patrick, Brunet, Joseph, Huang, Yuze et al.2024 · 13 citationsJournal of synchrotron radiation. 2024;31(Pt 3):566-577
Eikonal phase retrieval: Unleashing the fourth generation sources potential for enhanced propagation based tomography on biological samples2311.14745v3 · Alessandro Mirone, Joseph Brunet, Leandre Admans et al.2023 · 0 citationsarXiv
Deep Learning for Vascular Segmentation and Applications in Phase Contrast Tomography Imaging2311.13319v1 · Ekin Yagis, Shahab Aslani, Yashvardhan Jain et al.2023 · 2 citationsarXiv
Multidimensional Analysis of the Adult Human Heart in Health and Disease using Hierarchical Phase-Contrast Tomography (HiP-CT).37873359 · Brunet, J, Cook, A C, Walsh, C L et al.2024 · 6 citationsbioRxiv : the preprint server for biology. 2023
Evidence of artefacts made of giant sloth bones in central Brazil around the last glacial maximum.37434527 · Pansani, Thais R, Pobiner, Briana, Gueriau, Pierre et al.2023 · 33 citationsProceedings. Biological sciences. 2023;290(2002):20230316
Response to comment on "Exceptional preservation of organs in Devonian placoderms from the Gogo largerstätte".37167391 · Trinajstic, Kate, Long, John, Sanchez, Sophie et al.2023 · 0 citationsScience (New York, N.Y.). 2023;380(6645):eadg3748
Novel Insight into Pulmonary Fibrosis and Long COVID.36731065 · Kamp, Jan C, Werlein, Christopher, Plucinski, Edith K J et al.2023 · 14 citationsAmerican journal of respiratory and critical care medicine. 2023;207(8):1105-1107
Enhanced contrast synchrotron X-ray microtomography for describing skeleton-associated soft tissue defects in zebrafish mutants.36950679 · Leyhr, Jake, Sanchez, Sophie, Dollman, Kathleen N et al.2023 · 15 citationsFrontiers in endocrinology. 2023;14:1108916
Preparation of large biological samples for high-resolution, hierarchical, synchrotron phase-contrast tomography with multimodal imaging compatibility.36859614 · Brunet, J, Walsh, C L, Wagner, W L et al.2023 · 51 citationsNature protocols. 2023;18(5):1441-1461
Morphological and Chemical Investigation of Ovarian Structures in a Bovine Model by Contrast-Enhanced X-ray Imaging and Microscopy.36834956 · Gianoncelli, Alessandra, Sena Souza, Gabriela, Kourousias, George et al.2023 · 9 citationsInternational journal of molecular sciences. 2023;24(4)
Comment on: Intrapulmonary shunt and alveolar dead space in a cohort of patients with acute COVID-19 pneumonitis and early recovery.36634926 · Ackermann, Maximilian, Tafforeau, Paul, Brunet, Joseph et al.2023 · 1 citationThe European respiratory journal. 2023;61(2)
The fatal trajectory of pulmonary COVID-19 is driven by lobular ischemia and fibrotic remodelling.36206625 · Ackermann, Maximilian, Kamp, Jan C, Werlein, Christopher et al.2022 · 55 citationsEBioMedicine. 2022;85:104296
Reply to: Revisiting life history and morphological proxies for early mammaliaform metabolic rates.36151135 · Newham, Elis, Gill, Pamela G, Benton, Michael J et al.2022 · 1 citationNature communications. 2022;13(1):5564
Exceptional preservation of organs in Devonian placoderms from the Gogo lagerstätte.36107996 · Trinajstic, Kate, Long, John A, Sanchez, Sophie et al.2022 · 34 citationsScience (New York, N.Y.). 2022;377(6612):1311-1314
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