JC
Jacques Corbeil
cs.LGGene Expression ProfilingApoptosisbioinformaticsstat.MLSoftwareAlgorithmsCOVID-19Drug ResistanceMachine Learning
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
169 papers in the corpus · 1985–2026Refnd: Preventing Data Leakage in Relational Datasets2607.19376v1 · Anthony Lavertu, Jacob Cote, Jacques Corbeil et al.2026 · 0 citationsarXiv
QMAP: a benchmark for standardized evaluation of antimicrobial peptide MIC and hemolytic activity regression.42236847 · Lavertu, Anthony, Corbeil, Jacques, Germain, Pascal2026 · 1 citationScientific reports. 2026;16(1)
Extracting a COVID-19 signature from a multi-omic dataset.41059484 · Bauvin, Baptiste, Godon, Thibaud, Bachelot, Guillaume et al.2025 · 2 citationsFrontiers in bioinformatics. 2025;5:1645785
Using machine learning to predict the consumption of a Mediterranean diet with untargeted metabolomics data from controlled feeding studies.40935713 · Côté, Mélina, Brassard, Didier, Plante, Pier-Luc et al.2026 · 1 citationNutrition, metabolism, and cardiovascular diseases : NMCD. 2026;36(2):104290
Pharmaco-nutraceutical improvement of the response to obeticholic acid with omega-3 polyunsaturated fatty acids.40699986 · Lavoie, Audrey-Anne, Thérien, Ariane, Silva, Anisia et al.2025 · 0 citationsThe Biochemical journal. 2025;482(16)
Comparative genomics of Pseudomonas paraeruginosa.40709931 · Déraspe, Maxime, Burrows, Lori L, Voulhoux, Romé et al.2025 · 4 citationsJournal of bacteriology. 2025;207(8):e0014925
On Selecting Robust Approaches for Learning Predictive Biomarkers in Metabolomics Data Sets.40504988 · Godon, Thibaud, Plante, Pier-Luc, Corbeil, Jacques et al.2025 · 2 citationsAnalytical chemistry. 2025;97(24):12669-12678
Associations between circulating amino acids and metabolic dysfunction-associated steatotic liver disease in individuals living with severe obesity.39868884 · Maltais-Payette, Ina, Bourgault, Jérôme, Gauthier, Marie-Frédérique et al.2025 · 4 citationsPhysiological reports. 2025;13(3):e70171
Turncoat antibodies unmasked in a model of autoimmune demyelination: from biology to therapy.39677612 · Taghipour-Mirakmahaleh, Reza, Morin, Françoise, Zhang, Yu et al.2025 · 0 citationsbioRxiv : the preprint server for biology. 2024
Timing and Predictors of Loss of Infectivity Among Healthcare Workers With Mild Primary and Recurrent COVID-19: A Prospective Observational Cohort Study.37675577 · Dzieciolowska, Stefania, Charest, Hugues, Roy, Tonya et al.2024 · 2 citationsClinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2024;78(3):613-624
Substitution of dietary monounsaturated fatty acids from olive oil for saturated fatty acids from lard increases low-density lipoprotein apolipoprotein B-100 fractional catabolic rate in subjects with dyslipidemia associated with insulin resistance: a randomized controlled trial.38518848 · Desjardins, Louis-Charles, Brière, Francis, Tremblay, André J et al.2024 · 13 citationsThe American journal of clinical nutrition. 2024;119(5):1270-1279
Learning self-supervised molecular representations for drug-drug interaction prediction.38291362 · Kpanou, Rogia, Dallaire, Patrick, Rousseau, Elsa et al.2024 · 26 citationsBMC bioinformatics. 2024;25(1):47
Phylogenomic insights into evolutionary trajectories of multidrug resistant S. pneumoniae CC271 over a period of 14 years in China.37403170 · Zeng, Yuan, Song, Yuqin, Cui, Lanqing et al.2023 · 13 citationsGenome medicine. 2023;15(1):46
Timing and Predictors of Loss of Infectivity among Healthcare Workers with Primary and Recurrent COVID-19: a Prospective Observational Cohort Study10.1101/2023.06.16.23291449v1 · Dzieciolowska, S., Charest, H., Roy, T. et al.2023 · 0 citationsmedRxiv
Invariant Causal Set Covering Machines2306.04777v3 · Thibaud Godon, Baptiste Bauvin, Pascal Germain et al.2023 · 1 citationarXiv
Characterization of vancomycin-resistance vanD gene clusters in the human intestinal microbiota by metagenomics and culture-enriched metagenomics.36968950 · Brochu, Eliel, Huletsky, Ann, Boudreau, Dominique K et al.2023 · 7 citationsJAC-antimicrobial resistance. 2023;5(2):dlad026
Gut metagenome profile of the Nunavik Inuit youth is distinct from industrial and non-industrial counterparts.36566300 · Abed, Jehane Y, Godon, Thibaud, Mehdaoui, Fadwa et al.2022 · 10 citationsCommunications biology. 2022;5(1):1415
MOT: a Multi-Omics Transformer for multiclass classification tumour types predictions10.1101/2022.11.14.516459v1 · OSSENI, M. A., Tossou, P., Laviolette, F. et al.2022 · 15 citationsbioRxiv
Symptomatology during previous SARS-CoV-2 infection and serostatus before vaccination influence the immunogenicity of BNT162b2 COVID-19 mRNA vaccine.36311736 · Nantel, Sabryna, Bourdin, Benoîte, Adams, Kelsey et al.2022 · 11 citationsFrontiers in immunology. 2022;13:930252
RandomSCM: interpretable ensembles of sparse classifiers tailored for omics data2208.06436v1 · Thibaud Godon, Pier-Luc Plante, Baptiste Bauvin et al.2022 · 2 citationsarXiv
Antimicrobial Resistance in the Environment: Towards Elucidating the Roles of Bioaerosols in Transmission and Detection of Antibacterial Resistance Genes.35884228 · George, Paul B L, Rossi, Florent, St-Germain, Magali-Wen et al.2024 · 18 citationsAntibiotics (Basel, Switzerland). 2022;11(7)
Large-scale analysis of circulating glutamate and adipose gene expression in relation to abdominal obesity.35809202 · Maltais-Payette, Ina, Vijay, Jinchu, Simon, Marie-Michelle et al.2022 · 7 citationsAmino acids. 2022;54(9):1287-1294
Flexible protein database based on amino acid k-mers.35650262 · Déraspe, Maxime, Boisvert, Sébastien, Laviolette, François et al.2022 · 9 citationsScientific reports. 2022;12(1):9101
Mendelian Randomization Analysis Identifies Blood Tyrosine Levels as a Biomarker of Non-Alcoholic Fatty Liver Disease.35629944 · Gobeil, Émilie, Maltais-Payette, Ina, Taba, Nele et al.2022 · 34 citationsMetabolites. 2022;12(5)
The REinfection in COVID-19 Estimation of Risk (RECOVER) study: Reinfection and serology dynamics in a cohort of Canadian healthcare workers.35510653 · Racine, Étienne, Boivin, Guy, Longtin, Yves et al.2022 · 23 citationsInfluenza and other respiratory viruses. 2022;16(5):916-925
Single-cell transcriptomics of the ventral posterolateral nucleus-enriched thalamic regions from HSV-1-infected mice reveal a novel microglia/microglia-like transcriptional response.35387656 · Uyar, Olus, Dominguez, Juan Manuel, Bordeleau, Maude et al.2022 · 28 citationsJournal of neuroinflammation. 2022;19(1):81
Complete Genome Sequences of Klebsiella michiganensis and Citrobacter farmeri, KPC-2-Producers Serially Isolated from a Single Patient.34827346 · Abed, Jehane Y, Déraspe, Maxime, Bérubé, Ève et al.2021 · 8 citationsAntibiotics (Basel, Switzerland). 2021;10(11)
Optimization & Characterization of Interdigitated Electrodes for Microbial Growth Monitoring.34891508 · Hosseini, S Nazila, Sarati Das, P, Gagnon-Turcotte, G et al.2021 · 7 citationsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference. 2021;2021:1226-1229
On the robustness of generalization of drug-drug interaction models.34607569 · Kpanou, Rogia, Osseni, Mazid Abiodoun, Tossou, Prudencio et al.2021 · 16 citationsBMC bioinformatics. 2021;22(1):477
A novel bioluminescent herpes simplex virus 1 for in vivo monitoring of herpes simplex encephalitis.34548521 · Uyar, Olus, Plante, Pier-Luc, Piret, Jocelyne et al.2022 · 7 citationsScientific reports. 2021;11(1):18688
Serratia marcescens SCH909 as reservoir and source of genetic elements related to wide dissemination of antimicrobial resistance mechanisms.34264334 · Gambino, Anahí S, Déraspe, Maxime, Álvarez, Verónica E et al.2021 · 6 citationsFEMS microbiology letters. 2021;368(14)
Exploring polypharmacy with artificial intelligence: data analysis protocol.34284765 · Sirois, Caroline, Khoury, Richard, Durand, Audrey et al.2021 · 18 citationsBMC medical informatics and decision making. 2021;21(1):219
Genomic diversity and CRISPR-Cas systems in the cyanobacterium Nostoc in the High Arctic.33760341 · Jungblut, Anne D, Raymond, Frédéric, Dion, Moïra B et al.2021 · 14 citationsEnvironmental microbiology. 2021;23(6):2955-2968
Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter.33677572 · Dion, Moïra B, Plante, Pier-Luc, Zufferey, Edwige et al.2021 · 127 citationsNucleic acids research. 2021;49(6):3127-3138
Large-Scale Analysis of Circulating Amino Acids and Gene Expression in Relation to Abdominal Obesity10.1101/2020.11.19.388678v2 · Maltais-Payette, I., Vijay, J., Simon, M.-M. et al.2020 · 1 citationbioRxiv
A Lactococcal Phage Protein Promotes Viral Propagation and Alters the Host Proteomic Response During Infection.32722163 · Lemay, Marie-Laurence, Maaß, Sandra, Otto, Andreas et al.2021 · 7 citationsViruses. 2020;12(8)
The EcoChip 2: An Autonomous Sensor Platform for Multimodal Bio-environmental Monitoring of the Northern Habitat.33018900 · Das, P Sarati, Gagnon-Turcotte, G, Ouazaa, K et al.2020 · 6 citationsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference. 2020;2020:4101-4104
Machine learning analysis identifies genes differentiating triple negative breast cancers.32591639 · Kothari, Charu, Osseni, Mazid Abiodoun, Agbo, Lynda et al.2020 · 50 citationsScientific reports. 2020;10(1):10464
Phenotypic and Genetic Characterization of the Cheese Ripening Yeast Geotrichum candidum.32457706 · Perkins, Vincent, Vignola, Stéphanie, Lessard, Marie-Hélène et al.2023 · 34 citationsFrontiers in microbiology. 2020;11:737
Fast protein database as a service with kAAmer10.1101/2020.04.01.019984v1 · Deraspe, M., Boisvert, S., Laviolette, F. et al.2020 · 2 citationsbioRxiv
2017 Outbreak of Ebola Virus Disease in Northern Democratic Republic of Congo.30942884 · Nsio, Justus, Kapetshi, Jimmy, Makiala, Sheila et al.2020 · 29 citationsThe Journal of infectious diseases. 2020;221(5):701-706
Mass spectra alignment using virtual lock-masses.31186508 · Brochu, Francis, Plante, Pier-Luc, Drouin, Alexandre et al.2020 · 11 citationsScientific reports. 2019;9(1):8469
Criibacterium bergeronii gen. nov., sp. nov., a new member of the family Peptostreptococcaceae, isolated from human clinical samples.33586648 · Maheux, Andrée F, Boudreau, Dominique K, Abed, Jehane Y et al.2023 · 8 citationsInternational journal of systematic and evolutionary microbiology. 2019;71(3)
Culture-enriched human gut microbiomes reveal core and accessory resistance genes.30953542 · Raymond, Frédéric, Boissinot, Maurice, Ouameur, Amin Ahmed et al.2019 · 45 citationsMicrobiome. 2019;7(1):56
Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS.30932474 · Plante, Pier-Luc, Francovic-Fontaine, Élina, May, Jody C et al.2020 · 174 citationsAnalytical chemistry. 2019;91(8):5191-5199
Interpretable genotype-to-phenotype classifiers with performance guarantees.30858411 · Drouin, Alexandre, Letarte, Gaël, Raymond, Frédéric et al.2020 · 105 citationsScientific reports. 2019;9(1):4071
Complete Genome Sequence of Escherichia coli Siphophage BRET.30714038 · Ngazoa-Kakou, Solange, Shao, Yuyu, Rousseau, Geneviève M et al.2020 · 8 citationsMicrobiology resource announcements. 2019;8(5)
Clostridium difficile: Investigating Transmission Patterns Between Infected and Colonized Patients Using Whole Genome Sequencing.29846557 · Kong, Ling Yuan, Eyre, David W, Corbeil, Jacques et al.2020 · 62 citationsClinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2019;68(2):204-209
Communities of Phytoplankton Viruses across the Transition Zone of the St. Lawrence Estuary.30486388 · Labbé, Myriam, Raymond, Frédéric, Lévesque, Alice et al.2019 · 8 citationsViruses. 2018;10(12)
The EcoChip: A Wireless Multi-Sensor Platform for Comprehensive Environmental Monitoring.30387742 · Sylvain, Matthieu, Lehoux, Francis, Morency, Steeve et al.2019 · 15 citationsIEEE transactions on biomedical circuits and systems. 2018;12(6):1289-1300
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