GL

Ge Liu

0000-0001-9383-5186

cs.LGcs.AIcs.CLq-bio.QMstat.MLcs.CVq-bio.BMimmunologycs.IRcs.SD

On Valency

published · living versions

MutAtlas: A PDB-Wide Energy-Guided Atlas of Protein Mutation Effects

with Ruihan Guo, Chaoran Cheng, Zhanghan Ni, Neil He +1

1 version

W_322w8tcjv1 · current

Can We Read the Mind of an Audio LLM? A Verbalizable, Multilingual Middle-Layer Workspace

W_ffymxq8fv1

Preprints & journals

81 papers in the corpus · 2003–2026

How Much Can Language Models Gain from Test-Time Computation?

Bangji Yang, Jingyuan Li, Jiajun Fan et al.

0 citations

2610.01110v22026arXiv

Does Scaling Reinforcement Learning Really Require More Training?

Bangji Yang, Jiajun Fan, Hongbo Ma et al.

0 citations

2610.01133v22026arXiv

$S^3$ : Spectral Null-Space Swap Makes Reasoning Models Efficient

Hongbo Ma, Sansheng Cao, Jiajun Fan et al.

0 citations

2609.37976v22026arXiv

SpeechGym: An Audio-Native Gym for Training Voice Agents via Reinforcement Learning

Jiajun Fan, Jingyuan Li, Prashanth Gurunath Shivakumar et al.

0 citations

2608.26432v12026arXiv

Can We Read the Mind of an Audio LLM? A Verbalizable, Multilingual Middle-Layer Workspace

Jiajun Fan, Jingyuan Li, Prashanth Gurunath Shivakumar et al.

0 citations

2608.24958v12026arXiv

Stochastic Control Policies for Robust Molecular Transition Path Sampling

Jingqian Liu, Yu-Hsiang Wang, Yanru Qu et al.

0 citations

2608.13800v12026arXiv

LLMRouter: Unified Infrastructure for Developing, Evaluating, and Deploying LLM Routers

Tao Feng, Fangxu Yu, Haozhen Zhang et al.

0 citations

2608.06867v12026arXiv

Constraint-First Reasoning: A Training-Free Protocol for Exploiting Answer-Space Constraints in Mathematical Problem Solving

Hongbo Ma, Bangji Yang, Yunqian Selina Cheng et al.

0 citations

2608.05254v12026arXiv

Reinforcement Learning with Evolving Rubrics as Rewards for Audio Reasoning

Fangxu Yu, Tao Feng, Dehai Min et al.

0 citations

2608.02831v12026arXiv

Variable-Length Generative Protein Design via Generalized Poisson Flow

Chaoran Cheng, Zhanghan Ni, Yanru Qu et al.

0 citations

2607.09039v12026arXiv

TSRouter: Dynamic Modality-Model Selection for Time Series Reasoning

Fangxu Yu, Tao Feng, Dehai Min et al.

0 citations

2607.08940v22026arXiv

SF-Cluster: Frustration-Guided MSA Subsampling for Alternative Protein Conformation Recovery

Hanqun Cao, Zijun Gao, Chunbin Gu et al.

0 citations

2607.00180v12026arXiv

EventConnector: Mining Social Event Relations through Temporal Graphs

Zijie Lei, Haofei Yu, Ge Liu et al.

0 citations

2606.15448v12026arXiv

Generative Modeling of Discrete Latent Structures via Dynamic Policy Gradients

Stefan Ivanovic, Ge Liu, Mohammed El-Kebir

0 citations

2606.07400v12026arXiv

Alexithymia of nursing students in higher vocational college: application of latent profile analysis and network analysis.

Zhang, Jianhua, Liu, Ge, Zeng, Yaxin et al.

1 citation

423259802026Frontiers in psychiatry. 2026;17:1854583

Artificial intelligence tools for enzyme engineering and metabolic engineering.

Volk, Michael, Kaushik Pillalamarri, Vishal, Guo, Ruihan et al.

5 citations

422351032026Current opinion in biotechnology. 2026;100:103522

ExpWeaver: LLM Agents Learn from Experience via Latent RAG

Tao Feng, Tianyang Luo, Jingjun Xu et al.

0 citations

2606.01041v12026arXiv

Auto-Dreamer: Learning Offline Memory Consolidation for Language Agents

Chongrui Ye, Yuxiang Liu, Yu Wang et al.

0 citations

2605.20616v12026arXiv

Structure and Mechanism of a Two-component Lanthipeptide Toxin

Moreira, R., Giurgiu, C., Rahman, I. R. et al.

0 citations

10.64898/2026.05.13.724966v12026bioRxiv

Retrieval is Cheap, Show Me the Code: Executable Multi-Hop Reasoning for Retrieval-Augmented Generation

Jiashuo Sun, Jimeng Shi, Yixuan Xie et al.

0 citations

2605.12975v12026arXiv

The Many Faces of On-Policy Distillation: Pitfalls, Mechanisms, and Fixes

Siqi Zhu, Xuyan Ye, Hongyu Lu et al.

0 citations

2605.11182v22026arXiv

A-CODE: Fully Atomic Protein Co-Design with Unified Multimodal Diffusion

Chaoran Cheng, Jiaqi Guan, Milong Ren et al.

0 citations

2605.03360v12026arXiv

RouteProfile: Graph-Based Profiling for Cold-Start LLM Routing

Jingjun Xu, Hongji Pu, Tao Feng et al.

0 citations

2605.00180v22026arXiv

h-MINT: Modeling Pocket-Ligand Binding with Hierarchical Molecular Interaction Network

Yanru Qu, Yijie Zhang, Wenjuan Tan et al.

0 citations

2604.23134v12026arXiv

Thought-Retriever: Don't Just Retrieve Raw Data, Retrieve Thoughts for Memory-Augmented Agentic Systems

Tao Feng, Pengrui Han, Guanyu Lin et al.

0 citations

2604.12231v12026Transactions on Machine Learning Research (TMLR), 04/2026

Batched Contextual Reinforcement: A Task-Scaling Law for Efficient Reasoning

Bangji Yang, Hongbo Ma, Jiajun Fan et al.

0 citations

2604.02322v12026arXiv

Experimental immunologists in the era of artificial intelligence.

Wang, Yiquan, Ouyang, Wenhao O, Wang, Chaoyang et al.

0 citations

418568832026Trends in immunology. 2026;47(8):732-745

Steer2Adapt: Dynamically Composing Steering Vectors Elicits Efficient Adaptation of LLMs

Pengrui Han, Xueqiang Xu, Keyang Xuan et al.

0 citations

2602.07276v12026arXiv

M3: High-fidelity Text-to-Image Generation via Multi-Modal, Multi-Agent and Multi-Round Visual Reasoning

Bangji Yang, Ruihan Guo, Jiajun Fan et al.

0 citations

2602.06166v12026arXiv

Protein Autoregressive Modeling via Multiscale Structure Generation

Yanru Qu, Cheng-Yen Hsieh, Zaixiang Zheng et al.

1 citation

2602.04883v22026arXiv

Rethinking the Reranker: Boundary-Aware Evidence Selection for Robust Retrieval-Augmented Generation

Jiashuo Sun, Pengcheng Jiang, Saizhuo Wang et al.

0 citations

2602.03689v12026arXiv

Probing the Knowledge Boundary: An Interactive Agentic Framework for Deep Knowledge Extraction

Yuheng Yang, Siqi Zhu, Tao Feng et al.

0 citations

2602.00959v22026arXiv

UniRec: Unified Multimodal Encoding for LLM-Based Recommendations

Zijie Lei, Tao Feng, Zhigang Hua et al.

0 citations

2601.19423v32026Transactions on Machine Learning Research, 2026

R $^{2}$ Seg: Training-Free OOD Medical Tumor Segmentation via Anatomical Reasoning and Statistical Rejection

Shuaike Shen, Ke Liu, Jiaqing Xie et al.

0 citations

2511.12691v12025arXiv

Incentivizing Consistent, Effective and Scalable Reasoning Capability in Audio LLMs via Reasoning Process Rewards

Jiajun Fan, Roger Ren, Jingyuan Li et al.

0 citations

2510.20867v12025arXiv

Adaptive Divergence Regularized Policy Optimization for Fine-tuning Generative Models

Jiajun Fan, Tong Wei, Chaoran Cheng et al.

1 citation

2510.18053v12025arXiv

Fine-tuning Flow Matching Generative Models with Intermediate Feedback

Jiajun Fan, Chaoran Cheng, Shuaike Shen et al.

0 citations

2510.18072v12025arXiv

From Supervision to Exploration: What Does Protein Language Model Learn During Reinforcement Learning?

Hanqun Cao, Hongrui Zhang, Junde Xu et al.

1 citation

2510.01571v12025arXiv

Riemannian Consistency Model

Chaoran Cheng, Yusong Wang, Yuxin Chen et al.

0 citations

2510.00983v22025arXiv

Position: The Hidden Costs and Measurement Gaps of Reinforcement Learning with Verifiable Rewards

Fang Wu, Aaron Tu, Weihao Xuan et al.

0 citations

2509.21882v32025arXiv

Flow Matching Meets Biology and Life Science: A Survey

Zihao Li, Zhichen Zeng, Xiao Lin et al.

7 citations

2507.17731v22025arXiv

Lightweight MSA Design Advances Protein Folding From Evolutionary Embeddings

Hanqun Cao, Xinyi Zhou, Zijun Gao et al.

1 citation

2507.07032v32025arXiv

Variational Supervised Contrastive Learning

Ziwen Wang, Jiajun Fan, Thao Nguyen et al.

0 citations

2506.07413v32025arXiv

ProteinZero: Self-Improving Protein Generation via Online Reinforcement Learning

Ziwen Wang, Jiajun Fan, Ruihan Guo et al.

3 citations

2506.07459v52025Transactions on Machine Learning Research (2026)

Improving Protein Sequence Design through Designability Preference Optimization

Fanglei Xue, Andrew Kubaney, Zhichun Guo et al.

3 citations

2506.00297v12025arXiv

mCLM: A Modular Chemical Language Model that Generates Functional and Makeable Molecules

Carl Edwards, Chi Han, Gawon Lee et al.

1 citation

2505.12565v32025arXiv

$\alpha$ -Flow: A Unified Framework for Continuous-State Discrete Flow Matching Models

Chaoran Cheng, Jiahan Li, Jiajun Fan et al.

1 citation

2504.10283v12025arXiv

Hierarchical protein backbone generation with latent and structure diffusion

Jason Yim, Marouane Jaakik, Ge Liu et al.

1 citation

2504.09374v12025arXiv

Online Reward-Weighted Fine-Tuning of Flow Matching with Wasserstein Regularization

Jiajun Fan, Shuaike Shen, Chaoran Cheng et al.

1 citation

2502.06061v12025arXiv

Geometric Point Attention Transformer for 3D Shape Reassembly

Jiahan Li, Chaoran Cheng, Jianzhu Ma et al.

1 citation

2411.17788v22024arXiv

Career total: 117 works. 81 are in this corpus.Showing the 50 most recent.

Profile built from the corpus for this byline.

117

works

1,137

citations

18

h-index

Corpus papers per year

Corpus papers per year, 2003 to 2026. Busiest year 2026, 33 papers.
Year	Papers
2003	1
2004	1
2005	0
2006	0
2007	0
2008	1
2009	0
2010	0
2011	1
2012	0
2013	0
2014	0
2015	0
2016	1
2017	0
2018	0
2019	5
2020	5
2021	2
2022	3
2023	2
2024	10
2025	16
2026	33

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