JP
Jean-Baptiste Poline
neuroscienceBrain MappingneuroimagingMagnetic Resonance ImagingNeuroimagingfMRIAlgorithmsDatabases, FactualImage Processing, Computer-AssistedBrain
On Valency
published · living versionsW_xk7baty6·v1 · currentpublished
Teaching computational reproducibility for neuroimaging
with K. Jarrod Millman, Matthew Brett, Ross Barnowski
1 version
Preprints & journals
241 papers in the corpus · 1993–2026Retrospective harmonization of neuropsychiatric questionnaires in a large multi-site research consortium using expert mappings and semantic textual similaritygjd7v_v1 · Julia-Katharina Pfarr, Eva van Heese, Joshua Curtiss et al.2026 · 0 citationsPsyArXiv
Effect sizes for brain-based predictive models of cognition across the lifespan.42901956 · Christensen, E, Wiersch, L, Wang, M et al.2026 · 0 citationsCommunications psychology. 2026;4(1)
Reconciling global collaboration and data sovereignty in neuroscience.42786235 · Ray, Kimberly L, Botes, Marietjie, Collier, Melanie et al.2026 · 2 citationsNature neuroscience. 2026;29(10):2397-2407
Who Funds Open Data Sharing? Analysis of data availability statements in biomedical publications.42538917 · Lawrimore, Josh, Li, Christoph, Moraczewski, Dustin et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
When Can Brain Connectivity Track the Working Mind? A Large-Scale Benchmark of Dynamic Functional Connectivity Across Cognitive Paradigms.42427772 · Torabi, Mohammad, Poline, Jean-Baptiste, Mitsis, Georgios D2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
ABCD-ReproNim: An educational program for responsible and reproducible analyses of ABCD data.42269336 · Laird, Angela R, Bartley, Jessica E, Peraza, Julio A et al.2026 · 1 citationDevelopmental cognitive neuroscience. 2026;80:101755
Bridging the neuro-AI chasm: a framework for scalable, contextually adaptive training resources in large-scale brain data science.42312058 · Abrams, Mathew, Eke, Damian Okaibedi, Passecker, Johannes et al.2026 · 2 citationsFrontiers in psychology. 2026;17:1849742
Open neuroinformatics infrastructure ecosystem for federated multisite studies.42146517 · Wang, Michelle, Bhagwat, Nikhil, Cremonesi, Francesco et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Morphometric dissimilarity in association cortices linked to autism subtype with more severe symptoms.41651092 · Jiang, Hongxiu, Rodriguez-Cruces, Raul, Xie, Ke et al.2026 · 1 citationNeuroImage. 2026;328:121775
Neurosynth Compose: A web-based platform for flexible and reproducible neuroimaging meta-analysis.41614048 · Kent, James D, Lee, Nicholas, Laird, Angela R et al.2026 · 7 citationsImaging neuroscience (Cambridge, Mass.). 2026;4
Deep Learning for Cognitive Task Presence Prediction from Dynamic Functional Connectivity10.1101/2025.11.14.688561v1 · Chen, K., Torabi, M., Jian, J. et al.2025 · 0 citationsbioRxiv
Advancing image-based meta-analysis through systematic use of crowdsourced NeuroVault data.41120434 · Peraza, Julio A, Kent, James D, Blair, Ross W et al.2025 · 3 citationsScientific reports. 2025;15(1):36582
Clinical profile impacts the replicability of multivariate brain-behavioural associations.41280025 · Wang, Michelle, McPherson, Brent C, Misic, Bratislav et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2025
Mining the neuroimaging literature.40934113 · Dockès, Jérome, Oudyk, Kendra M, Torabi, Mohammad et al.2025 · 1 citationeLife. 2025;13
NiCLIP: Neuroimaging contrastive language-image pretraining model for predicting text from brain activation images.40661603 · Peraza, Julio A, Kent, James D, Nichols, Thomas E et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2025
Numerical Uncertainty in Linear Registration: An Experimental Study2508.00781v2 · Niusha Mirhakimi, Yohan Chatelain, Tristan Glatard et al.2025 · 2 citationsarXiv
AdapDISCOM: An Adaptive Sparse Regression Method for High-Dimensional Multimodal Data With Block-Wise Missingness and Measurement Errors2508.00120v2 · Maimouna Bald'e, Abdoul O. Diakit'e, Claudia Moreau et al.2025 · 0 citationsarXiv
Open-source platforms to investigate analytical flexibility in neuroimaging.40800896 · Sanz-Robinson, Jacob, Wang, Michelle, McPherson, Brent et al.2026 · 1 citationImaging neuroscience (Cambridge, Mass.). 2025;3
Challenging the status quo: A guide to open and reproducible neuroimaging for early career researchers.40800817 · Bhagwat, Nikhil, Urchs, Sebastian, Poline, Jean-Baptiste et al.2025 · 4 citationsImaging neuroscience (Cambridge, Mass.). 2025;3
Brain Imaging Phenotypes Associated with Polygenic Risk for Essential Tremor.40088050 · Medeiros, Miranda, Pastor-Bernier, Alexandre, Azizi, Houman et al.2025 · 3 citationsMovement disorders : official journal of the Movement Disorder Society. 2025;40(6):1160-1171
Advancing image-based meta-analysis for fMRI: A framework for leveraging NeuroVault data10.1101/2025.03.06.641922v1 · Peraza, J. A., Kent, J. D., Blair, R. W. et al.2025 · 1 citationbioRxiv
Predicting Parkinson's disease trajectory using clinical and functional MRI features: A reproduction and replication study.39982930 · Germani, Elodie, Bhagwat, Nikhil, Dugré, Mathieu et al.2025 · 3 citationsPloS one. 2025;20(2):e0317566
Meta all the way down: An overview of neuroimaging meta-analyses10.1101/2025.01.21.634094v1 · Oudyk, K. M., Dockes, J., Peraza, J. A. et al.2025 · 2 citationsbioRxiv
Automatic rating of incomplete hippocampal inversions evaluated across multiple cohorts.39148932 · Hemforth, Lisa, Couvy-Duchesne, Baptiste, De Matos, Kevin et al.2025 · 2 citationsArXiv. 2025
The impact of FreeSurfer versions on structural neuroimaging analyses of Parkinson's disease10.1101/2024.11.11.623071v1 · Sokolowski, A., Bhagwat, N., Kirbizakis, D. et al.2024 · 4 citationsbioRxiv
fastHDMI: Fast Mutual Information Estimation for High-Dimensional Data2410.10082v1 · Kai Yang, Masoud Asgharian, Nikhil Bhagwat et al.2024 · 0 citationsarXiv
Investigation of the effect of physiological factors on resting-state and task-based functional connectivity10.1101/2024.09.29.615715v1 · Askarinejad, S. E., Poline, J.-B., Mitsis, G. D.2024 · 2 citationsbioRxiv
Three Subtypes Of Autism Spectrum Disorder With Transcriptomic Signatures Derived From Morphometric Similarity Networks10.1101/2024.09.06.611561v1 · Jiang, H., Chai, X., Rodriguez Cruces, R. et al.2024 · 2 citationsbioRxiv
Ten simple rules for recognizing data and software contributions in hiring, promotion, and tenure.39116028 · Puebla, Iratxe, Ascoli, Giorgio A, Blume, Jeffrey et al.2024 · 17 citationsPLoS computational biology. 2024;20(8):e1012296
Investigation of the Effect of Physiological Artifacts on Task-based Functional Connectivity: A Simulation Study.40040207 · Askarinejad, S Emad, Poline, Jean-Baptiste, Mitsis, Georgios D2025 · 0 citationsAnnual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference. 2024;2024:1-5
The past, present, and future of the brain imaging data structure (BIDS).39308505 · Poldrack, Russell A, Markiewicz, Christopher J, Appelhoff, Stefan et al.2026 · 60 citationsImaging neuroscience (Cambridge, Mass.). 2024;2:1-19
Longitudinal brain structure changes in Parkinson's disease: A replication study.38295031 · Sokołowski, Andrzej, Bhagwat, Nikhil, Chatelain, Yohan et al.2024 · 8 citationsPloS one. 2024;19(1):e0295069
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS).37744469 · Poldrack, Russell A, Markiewicz, Christopher J, Appelhoff, Stefan et al.2026 · 0 citationsArXiv. 2024
On the variability of dynamic functional connectivity assessment methods.38587470 · Torabi, Mohammad, Mitsis, Georgios D, Poline, Jean-Baptiste2024 · 21 citationsGigaScience. 2024;13
Methods for decoding cortical gradients of functional connectivity.37577598 · Peraza, Julio A, Salo, Taylor, Riedel, Michael C et al.2025 · 13 citationsbioRxiv : the preprint server for biology. 2023
NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data.37720825 · Wang, Lei, Ambite, José Luis, Appaji, Abhishek et al.2026 · 4 citationsFrontiers in neuroinformatics. 2023;17:1215261
The Canadian Open Neuroscience Platform-An open science framework for the neuroscience community.37498959 · Harding, Rachel J, Bermudez, Patrick, Bernier, Alexander et al.2023 · 26 citationsPLoS computational biology. 2023;19(7):e1011230
NIDM-Terms: community-based terminology management for improved neuroimaging dataset descriptions and query.37533796 · Queder, Nazek, Tien, Vivian B, Abraham, Sanu Ann et al.2026 · 5 citationsFrontiers in neuroinformatics. 2023;17:1174156
Predicting Parkinson's disease progression using MRI-based white matter radiomic biomarker and machine learning: a reproducibility and replicability study10.1101/2023.05.05.539590v1 · Arafe, M., Bhagwat, N. P., Chatelain, Y. et al.2023 · 2 citationsbioRxiv
Data and Tools Integration in the Canadian Open Neuroscience Platform.37024500 · Poline, Jean-Baptiste, Das, Samir, Glatard, Tristan et al.2023 · 15 citationsScientific data. 2023;10(1):189
Reproducibility of cerebellar involvement as quantified by consensus structural MRI biomarkers in advanced essential tremor.36631461 · Wang, Qing, Aljassar, Meshal, Bhagwat, Nikhil et al.2023 · 9 citationsScientific reports. 2023;13(1):581
Micapipe: A pipeline for multimodal neuroimaging and connectome analysis.36070839 · Cruces, Raúl R, Royer, Jessica, Herholz, Peer et al.2023 · 116 citationsNeuroImage. 2022;263:119612
The Neuroimaging Data Model Linear Regression Tool (nidm_linreg): PyNIDM Project.39185142 · Kumar, Ashmita, Crowley, Albert, Queder, Nazek et al.2024 · 1 citationF1000Research. 2022;11:228
NeuroCI: Continuous Integration of Neuroimaging Results Across Software Pipelines and Datasets10.1101/2022.05.30.494062v1 · Sanz-Robinson, J., Jahanpour, A., Phillips, N. et al.2022 · 7 citationsbioRxiv
Recommendations for repositories and scientific gateways from a neuroscience perspective.35577825 · Sandström, Malin, Abrams, Mathew, Bjaalie, Jan G et al.2022 · 8 citationsScientific data. 2022;9(1):212
Population heterogeneity in clinical cohorts affects the predictive accuracy of brain imaging.35486643 · Benkarim, Oualid, Paquola, Casey, Park, Bo-Yong et al.2022 · 54 citationsPLoS biology. 2022;20(4):e3001627
Benchmarking missing-values approaches for predictive models on health databases.35426912 · Perez-Lebel, Alexandre, Varoquaux, Gaël, Le Morvan, Marine et al.2022 · 63 citationsGigaScience. 2022;11
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.35061216 · Poline, Jean-Baptiste, Kennedy, David N, Sommer, Friedrich T et al.2022 · 38 citationsNeuroinformatics. 2022;20(2):507-512
Beyond advertising: New infrastructures for publishing integrated research objects.34990466 · DuPre, Elizabeth, Holdgraf, Chris, Karakuzu, Agah et al.2022 · 25 citationsPLoS computational biology. 2022;18(1):e1009651
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.33851344 · Abrams, Mathew Birdsall, Bjaalie, Jan G, Das, Samir et al.2022 · 7 citationsNeuroinformatics. 2022;20(1):37-38
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