AC
Ashley Mae Conard
genomicsbioinformaticsDrosophilaDrosophila ProteinsGene Regulatory NetworksneuroscienceSoftwareagingAgingalternative splicing
On Valency
published · living versionsW_e3f7vbsb·v1 · currentpublished
Attribution-based diagnostics for single-cell foundation models
with Farnoush Rezaei Jafari, Tristan Lazard, Kenza Bouzid, Shruthi Bannur +4
1 version
Preprints & journals
17 papers in the corpus · 2015–2026EPIC: An open community challenge for sequence-based prediction of transcription initiation in five non-model metazoans.42817935 · Vorontsov, Ilya E, Gryzunov, Nikita, McDonald, Bayley R et al.2026 · 2 citationsbioRxiv : the preprint server for biology. 2026
The Evidence Aggregator: AI reasoning applied to rare disease diagnostics.42206490 · Twede, Hope, Pais, Lynn, Bryen, Samantha et al.2026 · 4 citationsGenetics in medicine : official journal of the American College of Medical Genetics. 2026;28(8):102612
A biologically annotated neural network for proteomic discovery in Parkinsons disease10.64898/2026.04.29.26351681v1 · Vijayaraghavan, A., Crawford, L., Krishnakant, S. et al.2026 · 0 citationsmedRxiv
Tackling the complexity of cancer with generative models.41997123 · Conard, Ashley Mae, Hughes, Madeline, Hall, James et al.2026 · 5 citationsCell. 2026;189(8):2218-2231
Predicting evolutionary rate as a pretraining task improves genome language model representations10.64898/2026.02.02.703275v1 · Consens, M. E., Yang, K. K., Hall, J. et al.2026 · 0 citationsbioRxiv
The transcription factor CLAMP is required for neurogenesis in Drosophila melanogaster.40672222 · Tsiarli, Maria A, Kentro, James A, Conard, Ashley M et al.2026 · 2 citationsbioRxiv : the preprint server for biology. 2025
Addressing biomedical data challenges and opportunities to inform a large-scale data lifecycle for enhanced data sharing, interoperability, analysis, and collaboration across stakeholders.39984563 · Sriram, Vivek, Conard, Ashley Mae, Rosenberg, Ilyana et al.2025 · 24 citationsScientific reports. 2025;15(1):6291
AI-Enhanced Sensemaking: Exploring the Design of a Generative AI-Based Assistant to Support Genetic Professionals2412.15444v1 · Angela Mastrianni, Hope Twede, Aleksandra Sarcevic et al.2024 · 8 citationsarXiv
Multioviz: an interactive platform for in silico perturbation and interrogation of gene regulatory networks.39080561 · Xie, Helen, Crawford, Lorin, Conard, Ashley Mae2024 · 2 citationsBMC bioinformatics. 2024;25(1):249
Accelerating precision medicine: a proposed framework for large-scale multiomics data integrity, interoperability, analysis, and collaboration in biomedical discovery10.1101/2024.03.15.24304358v1 · Sriram, V., Conard, A. M., Rosenberg, I. et al.2024 · 1 citationmedRxiv
Dual DNA/RNA-binding factor regulates dynamics of hnRNP splicing condensates.38260450 · Ray, Mukulika, Zaborowsky, Julia, Mahableshwarkar, Pranav et al.2026 · 5 citationsbioRxiv : the preprint server for biology. 2024
Sex-specific splicing occurs genome-wide during early Drosophila embryogenesis.37466240 · Ray, Mukulika, Conard, Ashley Mae, Urban, Jennifer et al.2023 · 16 citationseLife. 2023;12
Sex-specific aging in animals: Perspective and future directions.35072344 · Bronikowski, Anne M, Meisel, Richard P, Biga, Peggy R et al.2022 · 99 citationsAging cell. 2022;21(2):e13542
TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data.34125906 · Conard, Ashley Mae, Goodman, Nathaniel, Hu, Yanhui et al.2021 · 27 citationsNucleic acids research. 2021;49(W1):W641-W653
Neuromolecular and behavioral effects of ethanol deprivation in Drosophila10.1101/2021.01.02.425101v3 · D'Silva, N. M., McCullar, K. S., Conard, A. M. et al.2021 · 1 citationbioRxiv
Highlights from the ISCB Student Council Symposia in 2016.28003876 · Cuypers, Bart, Jacobsen, Annika, Siranosian, Ben et al.2019 · 6 citationsF1000Research. 2016;5
Using a Big Data Database to Identify Pathogens in Protein Data Space1501.05546v1 · Ashley Mae Conard, Stephanie Dodson, Jeremy Kepner et al.2015 · 0 citationsarXiv
Career total: 25 works. 17 are in this corpus.
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