MS
Martin C. Stumpe
cs.CVcs.LGDeep Learningastro-ph.EPcs.AIProstate cancerArtificial Intelligenceastro-ph.IMastro-ph.SRBehavior, Animal
On Valency
published · living versionsW_u2zgq48s·v1 · currentpublished
Planetary Candidates Observed by Kepler, III: Analysis of the First 16 Months of Data
with Natalie M. Batalha, Jason F. Rowe, Stephen T. Bryson, Thomas Barclay +67
1 version
W_2pjnmetm·v1published
Preprints & journals
55 papers in the corpus · 2007–2025A self-supervised framework for laboratory data imputation in electronic health records.40595435 · Heilbroner, Samuel P, Carter, Curtis, Vidmar, David M et al.2025 · 1 citationCommunications medicine. 2025;5(1):251
Efficient and Generalizable Prediction of Molecular Alterations in Multiple-Cancer Cohorts Using Hematoxylin and Eosin Whole Slide Images.39706295 · Ingale, Kshitij, Hong, Sun Hae, Hu, Qiyuan et al.2025 · 3 citationsModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2025;38(4):100691
Tremelimumab and durvalumab as neoadjuvant or non-operative management strategy of patients with microsatellite instability-high resectable gastric or gastroesophageal junction adenocarcinoma: the INFINITY study by GONO.39637944 · Raimondi, A, Lonardi, S, Murgioni, S et al.2025 · 103 citationsAnnals of oncology : official journal of the European Society for Medical Oncology. 2025;36(3):285-296
Efficient and generalizable prediction of molecular alterations in multiple cancer cohorts using H&E whole slide images2407.15816v1 · Kshitij Ingale, Sun Hae Hong, Qiyuan Hu et al.2024 · 0 citationsarXiv
Development and validation of a deep learning-based microsatellite instability predictor from prostate cancer whole-slide images.38594360 · Hu, Qiyuan, Rizvi, Abbas A, Schau, Geoffery et al.2024 · 19 citationsNPJ precision oncology. 2024;8(1):88
Evolving From Discrete Molecular Data Integrations to Actionable Molecular Insights Within the Electronic Health Record.38603638 · Chen, James L, Stumpe, Martin C, Cohen, Ezra2024 · 2 citationsJCO clinical cancer informatics. 2024;8:e2400011
Prediction of MET Overexpression in Lung Adenocarcinoma from Hematoxylin and Eosin Images.38493926 · Ingale, Kshitij, Hong, Sun Hae, Bell, Josh S K et al.2024 · 3 citationsThe American journal of pathology. 2024;194(6):1020-1032
Large Language Models with Retrieval-Augmented Generation for Zero-Shot Disease Phenotyping2312.06457v1 · Will E. Thompson, David M. Vidmar, Jessica K. De Freitas et al.2023 · 15 citationsarXiv
LIFE: A Deep Learning Framework for Laboratory Data Imputation in Electronic Health Records10.1101/2023.10.31.23297843v3 · Heilbroner, S. P., Carter, C., Vidmar, D. M. et al.2023 · 0 citationsmedRxiv
Prediction of MET Overexpression in Non-Small Cell Lung Adenocarcinomas from Hematoxylin and Eosin Images2310.07682v2 · Kshitij Ingale, Sun Hae Hong, Josh S.K. Bell et al.2023 · 0 citationsarXiv
Assessing the utility of molecular diagnostic classification for cancers of unknown primary.37712677 · Moore, Elle C, Blobe, Gerard C, DeVito, Nicholas C et al.2023 · 4 citationsCancer medicine. 2023;12(19):19394-19405
Validation of a Transcriptome-Based Assay for Classifying Cancers of Unknown Primary Origin.37099070 · Michuda, Jackson, Breschi, Alessandra, Kapilivsky, Joshuah et al.2023 · 43 citationsMolecular diagnosis & therapy. 2023;27(4):499-511
Artificial intelligence-augmented histopathologic review using image analysis to optimize DNA yield from formalin-fixed paraffin-embedded slides.36198869 · Osinski, Bolesław L, BenTaieb, Aïcha, Ho, Irvin et al.2022 · 14 citationsModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2022;35(12):1791-1803
Privacy preserving validation for multiomic prediction models.35388408 · Ahmed, Talal, Carty, Mark A, Wenric, Stephane et al.2022 · 2 citationsBriefings in bioinformatics. 2022;23(3)
AI-augmented histopathologic review using image analysis to optimize DNA yield and tumor purity from FFPE slides2203.13948v2 · Boles\law L. Osinski, Aicha BenTaieb, Irvin Ho et al.2022 · 1 citationarXiv
Imaging-based histological features are predictive of MET alterations in Non-Small Cell Lung Cancer2203.10062v2 · Rohan P. Joshi, Boles\law L. Osinski, Niha Beig et al.2022 · 1 citationarXiv
A pan-cancer organoid platform for precision medicine.34320344 · Larsen, Brian M, Kannan, Madhavi, Langer, Lee F et al.2022 · 105 citationsCell reports. 2021;36(4):109429
Deep Orthogonal Fusion: Multimodal Prognostic Biomarker Discovery Integrating Radiology, Pathology, Genomic, and Clinical Data2107.00648v1 · Nathaniel Braman, Jacob W. H. Gordon, Emery T. Goossens et al.2021 · 108 citationsarXiv
Privacy Preserving RNA-Model Validation Across Laboratories10.1101/2021.04.01.437893v3 · Ahmed, T., Carty, M. A., Wenric, S. et al.2021 · 0 citationsbioRxiv
Real-world Evidence of Diagnostic Testing and Treatment Patterns in US Patients With Breast Cancer With Implications for Treatment Biomarkers From RNA Sequencing Data.33446413 · Fernandes, Louis E, Epstein, Caroline G, Bobe, Alexandria M et al.2022 · 24 citationsClinical breast cancer. 2021;21(4):e340-e361
Evaluation of the Use of Combined Artificial Intelligence and Pathologist Assessment to Review and Grade Prostate Biopsies.33180129 · Steiner, David F, Nagpal, Kunal, Sayres, Rory et al.2021 · 124 citationsJAMA network open. 2020;3(11):e2023267
Development and Validation of a Deep Learning Algorithm for Gleason Grading of Prostate Cancer From Biopsy Specimens.32701148 · Nagpal, Kunal, Foote, Davis, Tan, Fraser et al.2021 · 222 citationsJAMA oncology. 2020;6(9):1372-1380
Deep learning-based survival prediction for multiple cancer types using histopathology images.32555646 · Wulczyn, Ellery, Steiner, David F, Xu, Zhaoyang et al.2020 · 266 citationsPloS one. 2020;15(6):e0233678
Prediction of mortality from 12-lead electrocardiogram voltage data using a deep neural network.32393799 · Raghunath, Sushravya, Ulloa Cerna, Alvaro E, Jing, Linyuan et al.2020 · 309 citationsNature medicine. 2020;26(6):886-891
Whole-Slide Image Focus Quality: Automatic Assessment and Impact on AI Cancer Detection.31921487 · Kohlberger, Timo, Liu, Yun, Moran, Melissa et al.2022 · 96 citationsJournal of pathology informatics. 2019;10:39
Erratum: Publisher Correction: Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer.31754638 · Nagpal, Kunal, Foote, Davis, Liu, Yun et al.2020 · 38 citationsNPJ digital medicine. 2019;2:113
Reply: 'The importance of study design in the application of artificial intelligence methods in medicine'.31646182 · Nagpal, Kunal, Liu, Yun, Chen, Po-Hsuan Cameron et al.2020 · 3 citationsNPJ digital medicine. 2019;2:100
An augmented reality microscope with real-time artificial intelligence integration for cancer diagnosis.31406351 · Chen, Po-Hsuan Cameron, Gadepalli, Krishna, MacDonald, Robert et al.2019 · 341 citationsNature medicine. 2019;25(9):1453-1457
Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer.31304394 · Nagpal, Kunal, Foote, Davis, Liu, Yun et al.2023 · 493 citationsNPJ digital medicine. 2019;2:48
Human-Centered Tools for Coping with Imperfect Algorithms during Medical Decision-Making1902.02960v1 · Carrie J. Cai, Emily Reif, Narayan Hegde et al.2019 · 404 citationsarXiv
Computer-Aided Laser Dissection: A Microdissection Workflow Leveraging Image Analysis Tools.30622835 · Hipp, Jason D, Johann, Donald J, Chen, Yun et al.2022 · 13 citationsJournal of pathology informatics. 2018;9:45
Impact of Deep Learning Assistance on the Histopathologic Review of Lymph Nodes for Metastatic Breast Cancer.30312179 · Steiner, David F, MacDonald, Robert, Liu, Yun et al.2019 · 487 citationsThe American journal of surgical pathology. 2018;42(12):1636-1646
Artificial Intelligence-Based Breast Cancer Nodal Metastasis Detection: Insights Into the Black Box for Pathologists.30295070 · Liu, Yun, Kohlberger, Timo, Norouzi, Mohammad et al.2020 · 397 citationsArchives of pathology & laboratory medicine. 2019;143(7):859-868
Detecting Cancer Metastases on Gigapixel Pathology Images1703.02442v2 · Yun Liu, Krishna Gadepalli, Mohammad Norouzi et al.2017 · 506 citationsMICCAI Tutorial (2017)
Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.27898976 · Gulshan, Varun, Peng, Lily, Coram, Marc et al.2017 · 7,681 citationsJAMA. 2016;316(22):2402-2410
Social behaviour and collective motion in plant-animal worms.26911961 · Franks, Nigel R, Worley, Alan, Grant, Katherine A J et al.2016 · 39 citationsProceedings. Biological sciences. 2016;283(1825):20152946
Exploration adjustment by ant colonies.26909180 · Doran, Carolina, Stumpe, Martin C, Sendova-Franks, Ana et al.2016 · 4 citationsRoyal Society open science. 2016;3(1):150533
Large Scale Business Discovery from Street Level Imagery1512.05430v2 · Qian Yu, Christian Szegedy, Martin C. Stumpe et al.2015 · 6 citationsarXiv
The role of social attraction and its link with boldness in the collective movements of three-spined sticklebacks.25598543 · Jolles, Jolle W, Fleetwood-Wilson, Adeline, Nakayama, Shinnosuke et al.2022 · 71 citationsAnimal behaviour. 2015;99:147-153
Ants work harder during consensus decision-making in small groups.25030387 · Cronin, Adam L, Stumpe, Martin C2015 · 23 citationsJournal of the Royal Society, Interface. 2014;11(98):20140641
Experience overrides personality differences in the tendency to follow but not in the tendency to lead.23986110 · Nakayama, Shinnosuke, Stumpe, Martin C, Manica, Andrea et al.2014 · 37 citationsProceedings. Biological sciences. 2013;280(1769):20131724
Harvester ants use interactions to regulate forager activation and availability.24031094 · Pinter-Wollman, Noa, Bala, Ashwin, Merrell, Andrew et al.2024 · 150 citationsAnimal behaviour. 2013;86(1):197-207
Fundamental Properties of Stars using Asteroseismology from Kepler & CoRoT and Interferometry from the CHARA Array1210.0012v1 · D. Huber, M. J. Ireland, T. R. Bedding et al.2012 · 255 citationsarXiv
The Derivation, Properties and Value of Kepler's Combined Differential Photometric Precision1208.0595v1 · Jessie L. Christiansen, Jon M. Jenkins, Thomas S. Barclay et al.2012 · 266 citationsarXiv
Oscillation mode frequencies of 61 main sequence and subgiant stars observed by Kepler1204.3147v3 · T. Appourchaux, W. J. Chaplin, R. A. Garcia et al.2012 · 163 citationsarXiv
Kepler Presearch Data Conditioning I - Architecture and Algorithms for Error Correction in Kepler Light Curves1203.1382v1 · Martin C. Stumpe, Jeffrey C. Smith, Jeffrey E. Van Cleve et al.2012 · 897 citationsarXiv
Kepler Presearch Data Conditioning II - A Bayesian Approach to Systematic Error Correction1203.1383v1 · Jeffrey C. Smith, Martin C. Stumpe, Jeffrey E. Van Cleve et al.2012 · 1,045 citationsarXivon Valency
Planetary Candidates Observed by Kepler, III: Analysis of the First 16 Months of Data1202.5852v1 · Natalie M. Batalha, Jason F. Rowe, Stephen T. Bryson et al.2012 · 1,042 citationsarXivon Valency
Kepler-20: A Sun-like Star with Three Sub-Neptune Exoplanets and Two Earth-size Candidates1112.4514v2 · Thomas N. Gautier III, David Charbonneau, Jason F. Rowe et al.2011 · 116 citationsarXiv
Calculation of local water densities in biological systems: a comparison of molecular dynamics simulations and the 3D-RISM-KH molecular theory of solvation.21174421 · Stumpe, Martin C, Blinov, Nikolay, Wishart, David et al.2011 · 89 citationsThe journal of physical chemistry. B. 2011;115(2):319-28
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