OF
Olivier François
Genetics, PopulationModels, Geneticevolutionary biologyBiological EvolutionGenetic VariationGenome, PlantDomesticationEvolution, Molecularlocal adaptationModels, Statistical
On Valency
published · living versionsW_kkrtmwdt·v1 · currentpublished
Preprints & journals
86 papers in the corpus · 2000–2026Genomic forecasting for climate-resilient fruit trees.42380074 · Criado, Maxime, Brisson, Mathieu, Alix, Karine et al.2026 · 0 citationsThe New phytologist. 2026;251(4):1640-1653
Adverse and adaptive placental DNA methylation changes linking prenatal air pollution exposure to child lung function: findings from the SEPAGES cohort.42341692 · Broséus, Lucile, Siroux, Valérie, Uzu, Gaëlle et al.2026 · 0 citationsEBioMedicine. 2026;129:106344
Group Lasso Based Selection for High-Dimensional Mediation Analysis.41646011 · Jérolon, Allan, Alarcon, Flora, Pittion, Florence et al.2026 · 1 citationStatistics in medicine. 2026;45(3-5):e70351
Linking Genomic Offset Statistics to the Shape of Selection Gradients.41730221 · Capblancq, Thibaut, Tauzin, Aurélien, Vigouroux, Yves et al.2026 · 4 citationsThe American naturalist. 2026;207(3):356-367
Human-Mediated Dispersal Routes Structure Sahara Mustard Genomics.41254873 · Winkler, Daniel E, Chapin, Kenneth J, Amer, Waffa M et al.2025 · 1 citationMolecular ecology. 2025;34(24):e70176
Immediate and durable effects of maternal tobacco consumption on placental DNA methylation: a replication and discovery study.40927052 · Masdoumier, Chloé, Broséus, Lucile, Chuffart, Florent et al.2026 · 0 citationsEnvironmental epigenetics. 2025;11(1):dvaf016
A Quantitative Theory for Genomic Offset Statistics.37307566 · Gain, Clément, Rhoné, Bénédicte, Cubry, Philippe et al.2023 · 61 citationsMolecular biology and evolution. 2023;40(6)
High-Dimensional Mediation Analysis: A New Method Applied to Maternal Smoking, Placental DNA Methylation, and Birth Outcomes.37058433 · Jumentier, Basile, Barrot, Claire-Cécile, Estavoyer, Maxime et al.2023 · 19 citationsEnvironmental health perspectives. 2023;131(4):47011
Museum Genomics of an Agricultural Super-Pest, the Colorado Potato Beetle, Leptinotarsa decemlineata (Chrysomelidae), Provides Evidence of Adaptation from Standing Variation.36036479 · Cohen, Zachary P, François, Olivier, Schoville, Sean D2023 · 11 citationsIntegrative and comparative biology. 2022;62(6):1827-1837
Theoretical analysis of principal components in an umbrella model of intraspecific evolution.36122755 · Estavoyer, Maxime, François, Olivier2022 · 4 citationsTheoretical population biology. 2022;148:11-21
The TRACTOR Project: TRACking and MoniToring Occupational Risks in Agriculture Using French Insurance Health Data (MSA).34562080 · Petit, Pascal, Bosson-Rieutort, Delphine, Maugard, Charlotte et al.2022 · 11 citationsAnnals of work exposures and health. 2022;66(3):402-411
Sparse latent factor regression models for genome-wide and epigenome-wide association studies.35245419 · Jumentier, Basile, Caye, Kevin, Heude, Barbara et al.2022 · 8 citationsStatistical applications in genetics and molecular biology. 2022;21(1)
Adaptive potential of Coffea canephora from Uganda in response to climate change.35060228 · de Aquino, Sinara Oliveira, Kiwuka, Catherine, Tournebize, Rémi et al.2022 · 22 citationsMolecular ecology. 2022;31(6):1800-1819
Genome-Scale Data Reveal Deep Lineage Divergence and a Complex Demographic History in the Texas Horned Lizard (Phrynosoma cornutum) throughout the Southwestern and Central United States.34849831 · Finger, Nicholas, Farleigh, Keaka, Bracken, Jason T et al.2022 · 23 citationsGenome biology and evolution. 2022;14(1)
A spectral theory for Wright's inbreeding coefficients and related quantities.34280184 · François, Olivier, Gain, Clément2021 · 7 citationsPLoS genetics. 2021;17(7):e1009665
Epigenetic Alterations of Maternal Tobacco Smoking during Pregnancy: A Narrative Review.34064931 · Nakamura, Aurélie, François, Olivier, Lepeule, Johanna2021 · 77 citationsInternational journal of environmental research and public health. 2021;18(10)
LEA 3: Factor models in population genetics and ecological genomics with R.33638893 · Gain, Clément, François, Olivier2021 · 109 citationsMolecular ecology resources. 2021;21(8):2738-2748
Managing Missing Data in the Hospital Survey on Patient Safety Culture: A Simulation Study.30908454 · Boussat, Bastien, François, Olivier, Viotti, Julien et al.2021 · 17 citationsJournal of patient safety. 2021;17(2):e98-e106
Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima.32936396 · Cubry, Philippe, Pidon, Hélène, Ta, Kim Nhung et al.2023 · 31 citationsRice (New York, N.Y.). 2020;13(1):66
Factor analysis of ancient population genomic samples.32938925 · François, Olivier, Jay, Flora2020 · 34 citationsNature communications. 2020;11(1):4661
Challenges Raised by Mediation Analysis in a High-Dimension Setting.32379489 · Blum, Michaël G B, Valeri, Linda, François, Olivier et al.2020 · 52 citationsEnvironmental health perspectives. 2020;128(5):55001
Inference of population genetic structure from temporal samples of DNA10.1101/801324v3 · Francois, O., Liegeois, S., Demaille, B. et al.2019 · 3 citationsbioRxiv
A multi-epoch model for the number of species within genera.31568764 · François, Olivier2021 · 6 citationsTheoretical population biology. 2020;133:97-103
Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (Brassica tournefortii).31380061 · Winkler, Daniel E, Chapin, Kenneth J, François, Olivier et al.2023 · 19 citationsEcology and evolution. 2019;9(14):7928-7941
Yam genomics supports West Africa as a major cradle of crop domestication.31114806 · Scarcelli, Nora, Cubry, Philippe, Akakpo, Roland et al.2020 · 105 citationsScience advances. 2019;5(5):eaaw1947
LFMM 2: Fast and Accurate Inference of Gene-Environment Associations in Genome-Wide Studies.30657943 · Caye, Kevin, Jumentier, Basile, Lepeule, Johanna et al.2019 · 410 citationsMolecular biology and evolution. 2019;36(4):852-860
Using high-throughput sequencing for investigating intra-host hepatitis C evolution over long retrospective periods.30395998 · Caporossi, A, Kulkarni, O, Blum, Mgb et al.2019 · 3 citationsInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2019;67:136-144
A western Sahara centre of domestication inferred from pearl millet genomes.30082736 · Burgarella, Concetta, Cubry, Philippe, Kane, Ndjido A et al.2019 · 128 citationsNature ecology & evolution. 2018;2(9):1377-1380
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.29983312 · Cubry, Philippe, Tranchant-Dubreuil, Christine, Thuillet, Anne-Céline et al.2019 · 142 citationsCurrent biology : CB. 2018;28(14):2274-2282.e6
Naturalgwas: An R package for evaluating genomewide association methods with empirical data.29673087 · François, Olivier, Caye, Kevin2018 · 14 citationsMolecular ecology resources. 2018;18(4):789-797
LFMM 2.0: Latent factor models for confounder adjustment in genome and epigenome-wide association studies10.1101/255893v2 · Caye, K., Jumentier, B., Francois, O.2018 · 13 citationsbioRxiv
At the Origin of a Worldwide Invasion: Unraveling the Genetic Makeup of the Caribbean Bridgehead Populations of the Dengue Vector Aedes aegypti.29267872 · Sherpa, Stéphanie, Rioux, Delphine, Goindin, Daniella et al.2018 · 29 citationsGenome biology and evolution. 2018;10(1):56-71
Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes.29025393 · Akakpo, Roland, Scarcelli, Nora, Chaïr, Hana et al.2018 · 23 citationsBMC genomics. 2017;18(1):782
The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences.29033977 · Cubry, Philippe, Vigouroux, Yves, François, Olivier2020 · 23 citationsFrontiers in genetics. 2017;8:139
New insights into HCV replication in original cells from Aedes mosquitoes.28830495 · Fallecker, Catherine, Caporossi, Alban, Rechoum, Yassine et al.2018 · 6 citationsVirology journal. 2017;14(1):161
Ultradeep sequencing of B and non-B HIV-1 subtypes: Viral diversity and drug resistance mutations before and after one month of antiretroviral therapy in naive patients.28830014 · Epaulard, Olivier, Signori-Schmuck, Anne, Larrat, Sylvie et al.2018 · 6 citationsJournal of clinical virology : the official publication of the Pan American Society for Clinical Virology. 2017;95:13-19
Theory-Based Interventions Combining Mental Simulation and Planning Techniques to Improve Physical Activity: Null Results from Two Randomized Controlled Trials.27899904 · Meslot, Carine, Gauchet, Aurélie, Allenet, Benoît et al.2025 · 67 citationsFrontiers in psychology. 2016;7:1789
Fast Inference of Individual Admixture Coefficients Using Geographic Data10.1101/080291v2 · Caye, K., Jay, F., Michel, O. et al.2016 · 74 citationsbioRxiv
Identifying outlier loci in admixed and in continuous populations using ancestral population differentiation statistics.27565448 · Martins, Helena, Caye, Kevin, Luu, Keurcien et al.2017 · 44 citationsMolecular ecology. 2016;25(20):5029-5042
First next-generation sequencing full-genome characterization of a hepatitis C virus genotype 7 divergent subtype.27515394 · Salmona, M, Caporossi, A, Simmonds, P et al.2017 · 27 citationsClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 2016;22(11):947.e1-947.e8
Overdiagnosis and overtreatment associated with breast cancer mammography screening: A simulation study with calibration to population-based data.27240167 · Seigneurin, Arnaud, Labarère, José, François, Olivier et al.2017 · 29 citationsBreast (Edinburgh, Scotland). 2016;28:60-6
Not just methods: User expertise explains the variability of outcomes of genome-wide studies10.1101/055046v1 · Kathleen E Lotterhos, Olivier Francois, Michael G.B. Blum2016 · 6 citationsbioRxiv
Amplification and pyrosequencing of near-full-length hepatitis C virus for typing and monitoring antiviral resistant strains.26827671 · Trémeaux, P, Caporossi, A, Ramière, C et al.2017 · 12 citationsClinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases. 2016;22(5):460.e1-460.e10
Controlling false discoveries in genome scans for selection.26671840 · François, Olivier, Martins, Helena, Caye, Kevin et al.2016 · 244 citationsMolecular ecology. 2016;25(2):454-69
TESS3: fast inference of spatial population structure and genome scans for selection.26417651 · Caye, Kevin, Deist, Timo M, Martins, Helena et al.2016 · 299 citationsMolecular ecology resources. 2016;16(2):540-8
Arbitrariness of peer review: A Bayesian analysis of the NIPS experiment1507.06411v1 · Olivier Francois2015 · 11 citationsarXiv
Detecting adaptive evolution based on association with ecological gradients: orientation matters!25690180 · Frichot, E, Schoville, S D, de Villemereuil, P et al.2015 · 84 citationsHeredity. 2015;115(1):22-8
Ultradeep pyrosequencing of NS3 to predict response to triple therapy with protease inhibitors in previously treated chronic hepatitis C patients.25411182 · Larrat, Sylvie, Kulkarni, Om, Claude, Jean-Baptiste et al.2016 · 7 citationsJournal of clinical microbiology. 2015;53(2):389-97
Microvascular MRI and unsupervised clustering yields histology-resembling images in two rat models of glioma.24849664 · Coquery, Nicolas, Francois, Olivier, Lemasson, Benjamin et al.2014 · 27 citationsJournal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 2014;34(8):1354-62
Genome scan methods against more complex models: when and how much should we trust them?24611968 · de Villemereuil, Pierre, Frichot, Éric, Bazin, Éric et al.2014 · 303 citationsMolecular ecology. 2014;23(8):2006-19
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