AL
Alessandro Laio
cs.LGcond-mat.stat-mechstat.MLphysics.comp-phComputer SimulationMolecular Dynamics SimulationProtein FoldingAlgorithmsModels, Molecularcond-mat.soft
On Valency
published · living versionsW_wxyxppmq·v1 · currentpublished
How well is surface ocean carbon represented in observations and ocean models?
with Viviana Acquaviva, Romina Wild, Amanda R. Fay, Thea H. Heimdal +1
1 version
Preprints & journals
165 papers in the corpus · 1997–2026Investigating causality between principal components in protein dynamics.42695576 · Banerjee, Debarshi, Hassanali, Ali, Laio, Alessandro2026 · 1 citationThe Journal of chemical physics. 2026;165(9)
How well is surface ocean carbon represented in observations and ocean models?2609.00133v1 · Viviana Acquaviva, Romina Wild, Alessandro Laio et al.2026 · 0 citationsarXivon Valency
BayesPrompt: human readable prompts that make sense2608.17866v1 · Franky Kevin Nando Tezoh, Ali Hussaini Umar, Alessandro Laio et al.2026 · 0 citationsarXiv
Texture Representations in Deep Vision Models: Comparing CNNs, Vision Transformers, and Human Perception2607.08321v1 · Ludovica de Paolis, Marco Baroni, Alessandro Laio et al.2026 · 0 citationsarXiv
Signal-to-Noise Ratio and Sample Size Govern Representational Alignment in Neural Networks2605.26973v1 · Ali Hussaini Umar, Alessandro Laio2026 · 0 citationsarXiv
Unsupervised Domain Shift Detection with Interpretable Subspace Attribution2605.15920v1 · Sebastian Springer, Alessandro Laio2026 · 0 citationsarXiv
Causality in Liquid Water as a Hallmark of Emergent Glassy Dynamics2604.19491v3 · Leon Huet, Vittorio Del Tatto, Debarshi Banerjee et al.2026 · 0 citationsarXiv
Scale adaptive and robust intrinsic dimension estimation via optimal neighbourhood identification.42014436 · Di Noia, Antonio, Macocco, Iuri, Glielmo, Aldo et al.2026 · 1 citationScientific reports. 2026;16(1)
Phase Transitions in Unsupervised Feature Selection2602.00660v1 · Jonathan Fiorentino, Michele Monti, Dimitrios Miltiadis-Vrachnos et al.2026 · 1 citationarXiv
Differential syntactic and semantic encoding in LLMs2601.04765v5 · Santiago Acevedo, Alessandro Laio, Marco Baroni2026 · 0 citationsarXiv
The Effect of Label Noise on the Information Content of Neural Representations2510.06401v1 · Ali Hussaini Umar, Franky Kevin Nando Tezoh, Jean Barbier et al.2025 · 0 citationsarXiv
Foundation neural-networks quantum states as a unified Ansatz for multiple hamiltonians.40764510 · Rende, Riccardo, Viteritti, Luciano Loris, Becca, Federico et al.2026 · 17 citationsNature communications. 2025;16(1):7213
Linear Scaling Causal Discovery from High-Dimensional Time Series by Dynamical Community Detection.40794069 · Allione, Matteo, Del Tatto, Vittorio, Laio, Alessandro2025 · 3 citationsPhysical review letters. 2025;135(4):047401
Towards a robust approach to infer causality from molecular dynamics simulations.40553462 · Del Tatto, Vittorio, Banerjee, Debarshi, Hassanali, Ali et al.2025 · 3 citationsThe Journal of chemical physics. 2025;162(24)
A quantitative analysis of semantic information in deep representations of text and images2505.17101v7 · Santiago Acevedo, Andrea Mascaretti, Riccardo Rende et al.2025 · 0 citationsTMLR 2026: https://openreview.net/forum?id=sBnaFSIuGR
Detecting Localized Density Anomalies in Multivariate Data via Coin-Flip Statistics2503.23927v3 · Sebastian Springer, Andre Scaffidi, Maximilian Autenrieth et al.2025 · 0 citationsarXiv
Automatic feature selection and weighting in molecular systems using Differentiable Information Imbalance.39747013 · Wild, Romina, Wodaczek, Felix, Del Tatto, Vittorio et al.2025 · 18 citationsNature communications. 2025;16(1):270
Unsupervised detection of semantic correlations in big data2411.02126v3 · Santiago Acevedo, Alex Rodriguez, Alessandro Laio2024 · 2 citationsCommunications Physics 8, 202 (2025)
A distributional simplicity bias in the learning dynamics of transformers2410.19637v2 · Riccardo Rende, Federica Gerace, Alessandro Laio et al.2024 · 1 citationNeurIPS 2024
Coarse-Grained Molecular Dynamics with Normalizing Flows.39223750 · Tamagnone, Samuel, Laio, Alessandro, Gabrié, Marylou2024 · 7 citationsJournal of chemical theory and computation. 2024
Unsupervised domain classification of AlphaFold2-predicted protein structures10.1101/2024.08.21.608992v1 · Barone, F., Laio, A., Punta, M. et al.2024 · 3 citationsbioRxiv
Intrinsic dimension as a multi-scale summary statistics in network modeling.39085320 · Macocco, Iuri, Mira, Antonietta, Laio, Alessandro2026 · 4 citationsScientific reports. 2024;14(1):17756
Density Estimation via Binless Multidimensional Integration2407.08094v3 · Matteo Carli, Alex Rodriguez, Alessandro Laio et al.2024 · 3 citationsarXiv
Emergence of a High-Dimensional Abstraction Phase in Language Transformers2405.15471v4 · Emily Cheng, Diego Doimo, Corentin Kervadec et al.2024 · 1 citationarXiv
Maximally informative feature selection using Information Imbalance: Application to COVID-19 severity prediction.38730063 · Wild, Romina, Sozio, Emanuela, Margiotta, Riccardo G et al.2024 · 10 citationsScientific reports. 2024;14(1):10744
Robust inference of causality in high-dimensional dynamical processes from the Information Imbalance of distance ranks.38687797 · Del Tatto, Vittorio, Fortunato, Gianfranco, Bueti, Domenica et al.2024 · 15 citationsProceedings of the National Academy of Sciences of the United States of America. 2024;121(19):e2317256121
Improving acute stroke assessment in non-enhanced computed tomography: automated tool for early ischemic lesion volume detection.38285327 · Bernardi, Mara Sabina, Rodriguez, Alex, Caruso, Paola et al.2024 · 0 citationsNeurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology. 2024;45(7):3245-3253
Agnostic detection of large-scale weather patterns in the northern hemisphere: from blockings to teleconnections2309.06833v2 · Sebastian Springer, Vera Melinda Galfi, Alessandro Laio et al.2023 · 12 citationsarXiv
Solvation thermodynamics from cavity shapes of amino acids.37545648 · Azizi, Khatereh, Laio, Alessandro, Hassanali, Ali2023 · 9 citationsPNAS nexus. 2023;2(8):pgad239
Mapping of attention mechanisms to a generalized Potts model2304.07235v4 · Riccardo Rende, Federica Gerace, Alessandro Laio et al.2023 · 31 citationsPhys. Rev. Research 6, 023057 (2024)
Do Machine-Learning Atomic Descriptors and Order Parameters Tell the Same Story? The Case of Liquid Water.36920997 · Donkor, Edward Danquah, Laio, Alessandro, Hassanali, Ali2023 · 27 citationsJournal of chemical theory and computation. 2023;19(14):4596-4605
Optimal transfer protocol by incremental layer defrosting2303.01429v1 · Federica Gerace, Diego Doimo, Stefano Sarao Mannelli et al.2023 · 1 citationarXiv
Intrinsic Dimension Estimation for Discrete Metrics.36827575 · Macocco, Iuri, Glielmo, Aldo, Grilli, Jacopo et al.2023 · 16 citationsPhysical review letters. 2023;130(6):067401
The geometry of hidden representations of large transformer models2302.00294v2 · Lucrezia Valeriani, Diego Doimo, Francesca Cuturello et al.2023 · 17 citationsarXiv
The generalized ratios intrinsic dimension estimator.36411305 · Denti, Francesco, Doimo, Diego, Laio, Alessandro et al.2022 · 31 citationsScientific reports. 2022;12(1):20005
Metadynamics for transition paths in irreversible dynamics2211.09476v2 · Tobias Grafke, Alessandro Laio2022 · 1 citationarXiv
DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets.36260616 · Russo, Elena Tea, Barone, Federico, Bateman, Alex et al.2022 · 8 citationsPLoS computational biology. 2022;18(10):e1010610
DADApy: Distance-based analysis of data-manifolds in Python.36277821 · Glielmo, Aldo, Macocco, Iuri, Doimo, Diego et al.2023 · 42 citationsPatterns (New York, N.Y.). 2022;3(10):100589
Unfolding and identification of membrane proteins in situ.36094473 · Galvanetto, Nicola, Ye, Zhongjie, Marchesi, Arin et al.2022 · 13 citationseLife. 2022;11
A Monte Carlo approach to the conformal bootstrap2206.05193v2 · Alessandro Laio, Uriel Luviano Valenzuela, Marco Serone2022 · 11 citationsarXiv
Prune and distill: similar reformatting of image information along rat visual cortex and deep neural networks2205.13816v1 · Paolo Muratore, Sina Tafazoli, Eugenio Piasini et al.2022 · 10 citationsAdvances in Neural Information Processing Systems (2022) Vol. 35 pp. 30206-30218
Multiple-Allele MHC Class II Epitope Engineering by a Molecular Dynamics-Based Evolution Protocol.35572587 · Ochoa, Rodrigo, Lunardelli, Victoria Alves Santos, Rosa, Daniela Santoro et al.2022 · 19 citationsFrontiers in immunology. 2022;13:862851
Ranking the information content of distance measures.36713323 · Glielmo, Aldo, Zeni, Claudio, Cheng, Bingqing et al.2024 · 59 citationsPNAS nexus. 2022;1(2):pgac039
When kinetics plays strange tricks.35058369 · Laio, Alessandro2022 · 0 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(4)
Computational Evolution Protocol for Peptide Design.35298821 · Ochoa, Rodrigo, Soler, Miguel A, Gladich, Ivan et al.2022 · 7 citationsMethods in molecular biology (Clifton, N.J.). 2022;2405:335-359
Redundant representations help generalization in wide neural networks2106.03485v4 · Diego Doimo, Aldo Glielmo, Sebastian Goldt et al.2021 · 5 citationsAdvances in Neural Information Processing Systems 35 (2022)
Dynamical landscape and multistability of a climate model.35153562 · Margazoglou, Georgios, Grafke, Tobias, Laio, Alessandro et al.2022 · 39 citationsProceedings. Mathematical, physical, and engineering sciences. 2021;477(2250):20210019
Unsupervised Learning Methods for Molecular Simulation Data.33945269 · Glielmo, Aldo, Husic, Brooke E, Rodriguez, Alex et al.2022 · 403 citationsChemical reviews. 2021;121(16):9722-9758
Distributional Results for Model-Based Intrinsic Dimension Estimators2104.13832v2 · Francesco Denti, Diego Doimo, Alessandro Laio et al.2021 · 3 citationsarXiv
Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.33711918 · Russo, Elena Tea, Laio, Alessandro, Punta, Marco2021 · 4 citationsBMC bioinformatics. 2021;22(1):121
Career total: 275 works. 165 are in this corpus.Showing the 50 most recent.
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