YL
Yingrui Li
Genetic VariationGenome, HumanSoftwareExomeGenomeHigh-Throughput Nucleotide SequencingAlgorithmsGenomicsInduced Pluripotent Stem CellsMutation
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
161 papers in the corpus · 2008–2026When Learned Context Planning Fails to Beat Strong Retrieval: A Controlled Study of Planning, Routing, and Reranking for Long-Context QA2609.26976v1 · Yingrui Li, Han Chen2026 · 0 citationsProceedings of the Seventh Workshop on Insights from Negative Results in NLP (2026), pp. 90-94
Tie Handling Is Part of the Evaluation Protocol: An Order-Invariance Audit for Tie-Heavy Recommender Scores2609.26977v1 · Chengkun Guo, Han Chen, Yilin Zhu et al.2026 · 0 citationsarXiv
What Changes When Fact-Verification Scores Improve? Evidence and Answer Accounting Across Trained Verifiers and LLMs2609.27064v1 · Han Chen, Yingrui Li2026 · 0 citationsarXiv
Platycodin D alleviates cardiac hypertrophy in the treatment of heart failure by inhibiting p53-dependent BCL-2/Bax/caspase-3 signaling pathway.42272847 · Li, Yingrui, Li, Heng, Liu, Bin et al.2026 · 0 citationsFrontiers in pharmacology. 2026;17:1832803
STARS: Semantic Tokens with Augmented Representations for Recommendation at Scale2512.10149v2 · Han Chen, Steven Zhu, Yingrui Li2025 · 0 citationsarXiv
Phenotypes in Brugada syndrome with different genotypes triggered by fever or inflammation using gene-edited iPSCs.41327470 · Li, Yingrui, Rose, Lena, Prädel, Timo et al.2025 · 0 citationsStem cell research & therapy. 2025;16(1):670
Thyrotropin Directly Affects Cardiac Electrophysiology and Is Associated With AF Prevalence.41332396 · Rahm, Ann-Kathrin, Wunsch, Maximilian N, Seibold, Dominik et al.2025 · 2 citationsCirculation. Arrhythmia and electrophysiology. 2025;18(12):e013775
Persistence of SARS-CoV-2-IgG antibody durability in convalescent COVID-19 patients 6 months after the natural infection.40861223 · Hua, Qiaoli, Zhang, Peng, Qin, Shengle et al.2025 · 0 citationsFrontiers in medicine. 2025;12:1623509
The Role of PIWI-Interacting RNA in Urologic Carcinoma and Its Clinical Implications.40737301 · Cai, Jiajia, Jiang, Shirui, Lu, Dongdong et al.2025 · 0 citationsCancer reports (Hoboken, N.J.). 2025;8(8):e70272
A gamma-ray imaging method for multiple radionuclides and low-activity radioactive sources.39729878 · Fan, Donghai, Wu, Rui, Wei, Dengke et al.2025 · 1 citationJournal of environmental radioactivity. 2025;282:107606
The association between weekend warrior physical activity pattern and albuminuria in hypertensive patients.39695522 · Xiong, Bingquan, Yu, Wenlong, Guan, Xinyi et al.2024 · 6 citationsBMC public health. 2024;24(1):3431
PepCA: Unveiling protein-peptide interaction sites with a multi-input neural network model.39391726 · Huang, Junxiong, Li, Weikang, Xiao, Bin et al.2024 · 10 citationsiScience. 2024;27(10):110850
Mechanisms of RNA alternative splicing dysregulation in triple-negative breast cancer.39788502 · Cao, Ziyu, Li, Yingrui2025 · 2 citationsZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences. 2024;49(7):1143-1154
Roles and Mechanisms of Dopamine Receptor Signaling in Catecholamine Excess Induced Endothelial Dysfunctions.39113882 · Yang, Zhen, Li, Yingrui, Huang, Mengying et al.2024 · 7 citationsInternational journal of medical sciences. 2024;21(10):1964-1975
Small conductance calcium-activated potassium channel contributes to stress induced endothelial dysfunctions.38901735 · Yang, Zhen, Li, Yingrui, Huang, Mengying et al.2024 · 4 citationsMicrovascular research. 2024;155:104699
Enhanced brain-targeting and efficacy of cannabidiol via RVG-Exo/CBD nanodelivery system.38878760 · Li, Yingrui, Chen, Ze, Guo, Jia et al.2024 · 3 citationsBiochemical and biophysical research communications. 2024;725:150260
Endoscopic management of post-cholecystectomy clip migration in biliary and gastrointestinal tract: A multicenter retrospective case series.38494352 · Li, Ying-Rui, Ji, Rui, Ren, Hong-Bo2024 · 2 citationsAsian journal of surgery. 2024;47(7):3172-3174
Association of domain-specific physical activity with albuminuria among prediabetes and diabetes: a large cross-sectional study.38459493 · Xiong, Bingquan, Wang, Yufan, He, Juan et al.2024 · 8 citationsJournal of translational medicine. 2024;22(1):252
In silico design of a broad-spectrum multiepitope vaccine against influenza virus.37967595 · Yuan, Lifang, Li, Xu, Li, Minchao et al.2024 · 20 citationsInternational journal of biological macromolecules. 2024;254(Pt 3):128071
Potential of cucurbitacin as an anticancer drug.37862969 · Li, Yan, Li, Yingrui, Yao, Yan et al.2023 · 44 citationsBiomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. 2023;168:115707
MSFC: a new feature construction method for accurate diagnosis of mass spectrometry data.37735183 · Feng, Xin, Dong, Zheyuan, Li, Yingrui et al.2023 · 3 citationsScientific reports. 2023;13(1):15694
Associations of starchy and non-starchy vegetables with risk of metabolic syndrome: evidence from the NHANES 1999-2018.37653494 · Li, Yingrui, Xiong, Bingquan, Zhu, Min et al.2023 · 17 citationsNutrition & metabolism. 2023;20(1):36
An investigation of long-term outcome of rabbit anti-thymocyte globulin and cyclosporine therapy for pediatric severe aplastic anemia.37546712 · Chang, Lixian, Yan, Mingchen, Zhang, Jingliao et al.2023 · 1 citationBlood science (Baltimore, Md.). 2023;5(3):180-186
High-Throughput Peptide Arrays Identify Potential Diagnostic Autoantibody Signatures in Early-Stage Lung Adenocarcinoma.36857775 · Luo, Rongrong, Zhong, Pei, Li, Xiying et al.2023 · 4 citationsCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2023;32(5):726-738
Novel insights in the pathomechanism of Brugada syndrome and fever-related type 1 ECG changes in a preclinical study using human-induced pluripotent stem cell-derived cardiomyocytes.36881552 · Li, Yingrui, Dinkel, Hendrik, Pakalniskyte, Dalia et al.2023 · 14 citationsClinical and translational medicine. 2023;13(3):e1130
Immunity of turbot Induced by inactivated vaccine of Aeromonas salmonicida from the perspective of DNA methylation.36845093 · Li, Yingrui, Su, Lin, Liu, Xiaofei et al.2023 · 2 citationsFrontiers in immunology. 2023;14:1124322
Epigenetic mechanism of L-type calcium channel β-subunit downregulation in short QT human induced pluripotent stem cell-derived cardiomyocytes with CACNB2 mutation.35894107 · Zhong, Rujia, Zhang, Feng, Yang, Zhen et al.2022 · 16 citationsEuropace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology. 2022;24(12):2028-2036
A Preclinical Study on Brugada Syndrome with a CACNB2 Variant Using Human Cardiomyocytes from Induced Pluripotent Stem Cells.35955449 · Zhong, Rujia, Schimanski, Theresa, Zhang, Feng et al.2022 · 15 citationsInternational journal of molecular sciences. 2022;23(15)
Recognition of Glycometabolism-Associated lncRNAs as Prognosis Markers for Bladder Cancer by an Innovative Prediction Model.35928440 · Tang, Dongdong, Li, Yangyang, Tang, Ying et al.2022 · 6 citationsFrontiers in genetics. 2022;13:918705
Sodium butyrate protects against oxidative stress in high-fat-diet-induced obese rats by promoting GSK-3β/Nrf2 signaling pathway and mitochondrial function.35848364 · Tang, Xue, Sun, Yongjuan, Li, Yingrui et al.2022 · 26 citationsJournal of food biochemistry. 2022;46(10):e14334
Immune Profiling in Gastric Cancer Reveals the Dynamic Landscape of Immune Signature Underlying Tumor Progression.35874784 · Wei, Yuhan, Zhang, Jianwei, Fan, Xueke et al.2022 · 5 citationsFrontiers in immunology. 2022;13:935552
Lipopolysaccharide Modifies Sodium Current Kinetics through ROS and PKC Signalling in Induced Pluripotent Stem-Derived Cardiomyocytes from Brugada Syndrome Patient.35448095 · Liao, Zhenxing, Li, Yingrui, Fan, Xuehui et al.2023 · 2 citationsJournal of cardiovascular development and disease. 2022;9(4)
Antiarrhythmic Effects of Vernakalant in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes from a Patient with Short QT Syndrome Type 1.35448088 · Xu, Qiang, Huang, Xuemei, Meng, Zenghui et al.2022 · 4 citationsJournal of cardiovascular development and disease. 2022;9(4)
Regulation of Ion Channel Function in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes by Cancer Cell Secretion Through DNA Methylation.35265687 · Zhong, Rujia, Zhang, Feng, Yang, Zhen et al.2022 · 6 citationsFrontiers in cardiovascular medicine. 2022;9:839104
Dopamine D1/D5 Receptor Signaling Is Involved in Arrhythmogenesis in the Setting of Takotsubo Cardiomyopathy.35187102 · Huang, Mengying, Yang, Zhen, Li, Yingrui et al.2022 · 11 citationsFrontiers in cardiovascular medicine. 2021;8:777463
A Multi-Factorial Observational Study on Sequential Fecal Microbiota Transplant in Patients with Medically Refractory Clostridioides difficile Infection.34831456 · Monaghan, Tanya M, Duggal, Niharika A, Rosati, Elisa et al.2021 · 24 citationsCells. 2021;10(11)
Alpha 1-adrenoceptor signalling contributes to toxic effects of catecholamine on electrical properties in cardiomyocytes.33604602 · Huang, Mengying, Fan, Xuehui, Yang, Zhen et al.2021 · 20 citationsEuropace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology. 2021;23(7):1137-1148
Effects of Antiarrhythmic Drugs on hERG Gating in Human-Induced Pluripotent Stem Cell-Derived Cardiomyocytes From a Patient With Short QT Syndrome Type 1.34025432 · Huang, Mengying, Liao, Zhenxing, Li, Xin et al.2021 · 13 citationsFrontiers in pharmacology. 2021;12:675003
The effects of lipid-lowering therapy on coronary plaque regression: a systematic review and meta-analysis.33846492 · Li, Yingrui, Deng, Songbai, Liu, Bin et al.2021 · 23 citationsScientific reports. 2021;11(1):7999
Identification and Characterization of Long Non-coding RNAs in the Intestine of Olive Flounder (Paralichthys olivaceus) During Edwardsiella tarda Infection.33868240 · Xiu, Yunji, Li, Yingrui, Liu, Xiaofei et al.2021 · 25 citationsFrontiers in immunology. 2021;12:623764
Differences in energy metabolism and mitochondrial redox status account for the differences in propensity for developing obesity in rats fed on high-fat diet.33747472 · Lu, Yipin, Li, Yingrui, Sun, Yongjuan et al.2024 · 14 citationsFood science & nutrition. 2021;9(3):1603-1613
Full-length transcriptome sequencing from multiple immune-related tissues of Paralichthys olivaceus.32927055 · Xiu, Yunji, Li, Yingrui, Liu, Xiaofei et al.2021 · 25 citationsFish & shellfish immunology. 2020;106:930-937
Association of epicardial adipose tissue with non-alcoholic fatty liver disease: a meta-analysis.31432447 · Liu, Bin, Li, Yingrui, Li, Yu et al.2020 · 51 citationsHepatology international. 2019;13(6):757-765
Handheld projective imaging device for near-infrared fluorescence imaging and intraoperative guidance of sentinel lymph node resection.31436070 · Li, Chenmeng, Liu, Peng, Shao, Pengfei et al.2020 · 15 citationsJournal of biomedical optics. 2019;24(8):1-4
Whole genome sequencing and variant discovery in the ASPIRE autism spectrum disorder cohort.31038196 · Callaghan, Daniel Benjamin, Rogic, Sanja, Tan, Powell Patrick Cheng et al.2020 · 24 citationsClinical genetics. 2019;96(3):199-206
Molecular Mechanisms and Countermeasures of Immunotherapy Resistance in Malignant Tumor.31205532 · Jiang, Xiaoyue, Li, Li, Li, Yingrui et al.2020 · 14 citationsJournal of Cancer. 2019;10(7):1764-1771
Efficacy and safety of combination immunotherapy for malignant solid tumors: A systematic review and meta-analysis.31092375 · Wei, Yuhan, Du, Qi, Jiang, Xiaoyue et al.2019 · 41 citationsCritical reviews in oncology/hematology. 2019;138:178-189
Characteristics and prognostic values of traditional pathological parameters and advanced molecular subtypes in women in Beijing with operable breast cancer: a retrospective analysis.30413499 · Li, Qin, Li, Li, Jiang, Xiaoyue et al.2020 · 1 citationBMJ open. 2018;8(11):e021819
Genomic landscapes of Chinese sporadic autism spectrum disorders revealed by whole-genome sequencing.30392784 · Wu, Jinyu, Yu, Ping, Jin, Xin et al.2019 · 51 citationsJournal of genetics and genomics = Yi chuan xue bao. 2018;45(10):527-538
Clinical outcomes comparison of 10 years versus 5 years of adjuvant endocrine therapy in patients with early breast cancer.30314452 · Li, Li, Chang, Bingmei, Jiang, Xiaoyue et al.2019 · 27 citationsBMC cancer. 2018;18(1):977
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