IH
Isaac Y. Ho
q-bio.GNGenomeSequence Analysis, DNASoftwareAlgorithmscs.DSctDNADatabases, GeneticGenome, HumanGenome, Plant
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
14 papers in the corpus · 2002–2025The diagnostic accuracy of next-generation sequencing in advanced NSCLC.40919126 · Ko, Elaine Yee-Ling, Wong, Jason Wing Hon, Shih, David Jen Hao et al.2025 · 2 citationsThe journal of liquid biopsy. 2025;9:100325
Meraculous-2D: Haplotype-sensitive Assembly of Highly Heterozygous genomes1703.09852v1 · Eugene Goltsman, Isaac Ho, Daniel Rokhsar2017 · 7 citationsarXiv
Meraculous2: fast accurate short-read assembly of large polymorphic genomes1608.01031v2 · Jarrod A. Chapman, Isaac Y. Ho, Eugene Goltsman et al.2016 · 11 citationsarXiv
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
GO-Elite: a flexible solution for pathway and ontology over-representation.22743224 · Zambon, Alexander C, Gaj, Stan, Ho, Isaac et al.2013 · 263 citationsBioinformatics (Oxford, England). 2012;28(16):2209-10
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.21806842 · Katayama, Toshiaki, Wilkinson, Mark D, Vos, Rutger et al.2011 · 21 citationsJournal of biomedical semantics. 2011;2:4
Meraculous: de novo genome assembly with short paired-end reads.21876754 · Chapman, Jarrod A, Ho, Isaac, Sunkara, Sirisha et al.2011 · 212 citationsPloS one. 2011;6(8):e23501
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.20047655 · van Iersel, Martijn P, Pico, Alexander R, Kelder, Thomas et al.2010 · 227 citationsBMC bioinformatics. 2010;11:5
Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses.20128909 · Swaminathan, Kankshita, Alabady, Magdy S, Varala, Kranthi et al.2010 · 102 citationsGenome biology. 2010;11(2):R12
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).18454138 · Martinez, Diego, Berka, Randy M, Henrissat, Bernard et al.2008 · 1,241 citationsNature biotechnology. 2008;26(5):553-60
The DNA sequence and biology of human chromosome 19.15057824 · Grimwood, Jane, Gordon, Laurie A, Olsen, Anne et al.2004 · 352 citationsNature. 2004;428(6982):529-35
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.12481130 · Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K et al.2002 · 1,639 citationsScience (New York, N.Y.). 2002;298(5601):2157-67
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes.12142439 · Aparicio, Samuel, Chapman, Jarrod, Stupka, Elia et al.2002 · 1,591 citationsScience (New York, N.Y.). 2002;297(5585):1301-10
Career total: 23 works. 14 are in this corpus.
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