SZ
Stefan Zasada
cs.DCmolecular dynamicsbinding free energyblood flowbrain cancercancer modellingcerebrovascular bloodflowChemistry, PharmaceuticalcloudComputer Simulation
On Valency
published · living versionsW_dwz7446r·v1 · currentpublished
FabSim: facilitating computational research through automation on large-scale and distributed e-infrastructures
with Derek Groen, Agastya Bhati, James Suter, James Hetherington +1
1 version
Preprints & journals
17 papers in the corpus · 2008–2020Large-scale binding affinity calculations on commodity compute clouds.33178415 · Zasada, S J, Wright, D W, Coveney, P V2025 · 3 citationsInterface focus. 2020;10(6):20190133
Rapid, accurate, precise and reproducible ligand-protein binding free energy prediction.33178418 · Wan, Shunzhou, Bhati, Agastya P, Zasada, Stefan J et al.2025 · 153 citationsInterface focus. 2020;10(6):20200007
High-throughput binding affinity calculations at extreme scales.30577753 · Dakka, Jumana, Turilli, Matteo, Wright, David W et al.2019 · 16 citationsBMC bioinformatics. 2018;19(Suppl 18):482
Rapid and Reliable Binding Affinity Prediction of Bromodomain Inhibitors: A Computational Study.28005370 · Wan, Shunzhou, Bhati, Agastya P, Zasada, Stefan J et al.2018 · 77 citationsJournal of chemical theory and computation. 2017;13(2):784-795
A Distributed Multi-agent Market Place for HPC Compute Cycle Resource Trading1512.04343v1 · Stefan J. Zasada, Peter V. Coveney2015 · 1 citationarXiv
FabSim: facilitating computational research through automation on large-scale and distributed e-infrastructures1512.02194v1 · Derek Groen, Agastya Bhati, James Suter et al.2015 · 38 citationsarXivon Valency
p-medicine: A Medical Informatics Platform for Integrated Large Scale Heterogeneous Patient Data.25954394 · Marés, J, Shamardin, L, Weiler, G et al.2015 · 15 citationsAMIA ... Annual Symposium proceedings. AMIA Symposium. 2014;2014:872-81
Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations.24427530 · Groen, D, Borgdorff, J, Bona-Casas, C et al.2014 · 36 citationsInterface focus. 2013;3(2):20120087
Survey of Multiscale and Multiphysics Applications and Communities1208.6444v3 · Derek Groen, Stefan J. Zasada, Peter V. Coveney2012 · 79 citationsarXiv
From base pair to bedside: molecular simulation and the translation of genomics to personalized medicine.22899636 · Wright, David W, Wan, Shunzhou, Shublaq, Nour et al.2013 · 13 citationsWiley interdisciplinary reviews. Systems biology and medicine. 2012;4(6):585-98
On the usability of grid middleware and security mechanisms.21768148 · Zasada, Stefan J, Haidar, Ali N, Coveney, Peter V2011 · 4 citationsPhilosophical transactions. Series A, Mathematical, physical, and engineering sciences. 2011;369(1949):3413-28
Clinically driven design of multi-scale cancer models: the ContraCancrum project paradigm.22670213 · Marias, K, Dionysiou, D, Sakkalis, V et al.2012 · 30 citationsInterface focus. 2011;1(3):450-61
Audited credential delegation: a usable security solution for the virtual physiological human toolkit.22670214 · Haidar, Ali N, Zasada, Stefan J, Coveney, Peter V et al.2012 · 6 citationsInterface focus. 2011;1(3):462-73
The Virtual Physiological Human ToolKit.20643685 · Cooper, Jonathan, Cervenansky, Frederic, De Fabritiis, Gianni et al.2010 · 21 citationsPhilosophical transactions. Series A, Mathematical, physical, and engineering sciences. 2010;368(1925):3925-36
Petascale lattice-Boltzmann studies of amphiphilic cubic liquid crystalline materials in a globally distributed high-performance computing and visualization environment.20643689 · Saksena, Radhika S, Mazzeo, Marco D, Zasada, Stefan J et al.2010 · 1 citationPhilosophical transactions. Series A, Mathematical, physical, and engineering sciences. 2010;368(1925):3983-99
Patient-specific simulation as a basis for clinical decision-making.18573758 · Sadiq, S Kashif, Mazzeo, Marco D, Zasada, Stefan J et al.2008 · 43 citationsPhilosophical transactions. Series A, Mathematical, physical, and engineering sciences. 2008;366(1878):3199-219
Automated molecular simulation based binding affinity calculator for ligand-bound HIV-1 proteases.18710212 · Sadiq, S Kashif, Wright, David, Watson, Simon J et al.2008 · 68 citationsJournal of chemical information and modeling. 2008;48(9):1909-19
Career total: 63 works. 17 are in this corpus.
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