HC
Haoyang Cai
ChromothripsisDatabases, GeneticDNA Copy Number VariationsNeoplasmsSoftwareChromosome AberrationsDatabases, Factualquant-phToothbioinformatics
On Valency
published · living versionsW_5s66n4vz·v1 · currentpublished
Force Sensing in a Recoverable Bosonic Quantum Memory
with Tairong Bai, Wen Zheng, Xianke Li, Yangyang Ge +7
1 version
Preprints & journals
64 papers in the corpus · 2008–2026CUBE: Multimodal Representation Learning Reveals Biological Structure Across Histomorphology, Spatial Protein Phenotypes, and Transcriptome-Associated Signals10.64898/2026.09.14.751379v1 · Ge, Z., Cai, H.2026 · 0 citationsbioRxiv
Correction: TB-DROP: deep learning-based drug resistance prediction of Mycobacterium tuberculosis utilizing whole genome mutations.42387368 · Wang, Yu, Jiang, Zhonghua, Liang, Pengkuan et al.2026 · 1 citationBMC genomics. 2026;27(1)
Efficient Implementation of a Single-Qutrit Gate Set via Coherent Control.42360971 · Yu, Xiang-Min, Deng, Xiang, Zheng, Wen et al.2026 · 0 citationsPhysical review letters. 2026;136(23):230803
Corrigendum to "Single - nucleus transcriptomics uncovers the spatiotemporal development of roots and a histone deacetylase 2B - centered regulatory network in Tartary buckwheat" [Int. J. Biol. Macromol., volume 330, November 2025, 148271].41826171 · Hou, Yukang, Yuan, Yawen, Gao, Shuo et al.2026 · 0 citationsInternational journal of biological macromolecules. 2026;353:151253
Publisher Correction: SLC2A1+ tumour-associated macrophages spatially control CD8+ T cell function and drive resistance to immunotherapy in non-small-cell lung cancer.41555037 · Wang, Lei, Chu, Han, Chen, Degao et al.2026 · 0 citationsNature cell biology. 2026;28(2):380
SLC2A1+ tumour-associated macrophages spatially control CD8+ T cell function and drive resistance to immunotherapy in non-small-cell lung cancer.41501177 · Wang, Lei, Chu, Han, Chen, Degao et al.2026 · 16 citationsNature cell biology. 2026;28(2):338-348
Mechanism of T7 Primase Selecting Active Priming Sites Among Genome.41594618 · Zhang, Zhiming, Chen, Jiang, Liu, Wenyue et al.2026 · 0 citationsBiomolecules. 2026;16(1)
The crystal structure of EpHTT, a hydroxycinnamoyl transferase from Echinacea purpurea.41328548 · Bao, Hui, Jiang, Di, Tang, Chengbing et al.2025 · 0 citationsActa crystallographica. Section D, Structural biology. 2026;82(Pt 1):43-52
Information-Scrambling-Enhanced Quantum Sensing Beyond the Standard Quantum Limit2512.21157v1 · Yangyang Ge, Haoyu Zhou, Wen Zheng et al.2025 · 0 citationsarXiv
Sox9 regulation of hexokinase 1 controls neuroinflammatory astrocyte subtypes in a rat model of neuropathic pain.41271638 · Chen, Yonglong, Liao, Yu, Zhu, Huazhang et al.2025 · 8 citationsNature communications. 2025;16(1):10249
Single - nucleus transcriptomics uncovers the spatiotemporal development of roots and a histone deacetylase 2B - centered regulatory network in Tartary buckwheat.41093208 · Hou, Yukang, Yuan, Yawen, Gao, Shuo et al.2025 · 1 citationInternational journal of biological macromolecules. 2025;330(Pt 4):148271
CCRR: a user-friendly platform for analyzing complex chromosomal rearrangements in tumors.40607625 · Liu, Jinjiang, Wang, Kun, Yuan, Yawen et al.2025 · 0 citationsBioinformatics (Oxford, England). 2025;41(7)
Homologous recombination deficiency among patients with germline or somatic non-BRCA1/2 homologous recombination repair gene variations.40527918 · Li, Yue, Yang, Xinhua, Cai, Haoyang et al.2025 · 12 citationsNPJ precision oncology. 2025;9(1):192
Variational quantum algorithms with invariant probabilistic error cancellation on noisy quantum processors2506.07039v1 · Yulin Chi, Hongyi Shi, Wen Zheng et al.2025 · 2 citationsSci. China-Phys. Mech. Astron. 69, 210312 (2026)
A spatially organized Cd24a+/Pax9+ stem cell core governs postnatal tooth establishment.40479070 · Shan, Ce, Wang, Wei, Lu, Hui et al.2025 · 16 citationsScience advances. 2025;11(23):eadu5653
Recapitulation of endochondral ossification by hPSC-derived SOX9+ sclerotomal progenitors.40118845 · Xiong, Jingfei, Ma, Runxin, Xie, Kun et al.2025 · 24 citationsNature communications. 2025;16(1):2781
Identification of human cranio-maxillofacial skeletal stem cells for mandibular development.39742474 · Wang, Zhuo, Wang, Kun, Yu, Yejia et al.2025 · 19 citationsScience advances. 2025;11(1):eado7852
A Chemically Defined Culture for Tooth Reconstitution.39601338 · Zhang, Ziwei, Hu, Hong, Xu, Zhiheng et al.2025 · 10 citationsAdvanced science (Weinheim, Baden-Wurttemberg, Germany). 2025;12(3):e2404345
Spatial and temporal gene expression patterns during early human odontogenesis process.39081334 · Yu, Yejia, Wang, Kun, Wang, Zhuo et al.2024 · 5 citationsFrontiers in bioengineering and biotechnology. 2024;12:1437426
Genome-wide CRISPR screenings identified SMCHD1 as a host-restricting factor for AAV transduction.38976714 · Wang, Chenlu, Liu, Yu, Xiong, Jingfei et al.2024 · 6 citationsPLoS pathogens. 2024;20(7):e1012344
MSX1+PDGFRAlow limb mesenchyme-like cells as an efficient stem cell source for human cartilage regeneration.38428414 · Liao, Yuansong, Kang, Fanchen, Xiong, Jingfei et al.2024 · 4 citationsStem cell reports. 2024;19(3):399-413
TB-DROP: deep learning-based drug resistance prediction of Mycobacterium tuberculosis utilizing whole genome mutations.38347478 · Wang, Yu, Jiang, Zhonghua, Liang, Pengkuan et al.2024 · 34 citationsBMC genomics. 2024;25(1):167
A dynamic thermal sensing mechanism with reconfigurable expanded-plane structures2401.03364v1 · Haohan Tan, Haoyang Cai, Peng Jin et al.2024 · 7 citationsarXiv
SingleScan: a comprehensive resource for single-cell sequencing data processing and mining.38062357 · Wang, Kun, Zhang, Xiao, Cheng, Hansen et al.2023 · 2 citationsBMC bioinformatics. 2023;24(1):463
Machine learning identified MDK score has prognostic value for idiopathic pulmonary fibrosis based on integrated bulk and single cell expression data.38075691 · Zhang, Shichen, Zhang, Lanlan, Wang, Lu et al.2023 · 15 citationsFrontiers in genetics. 2023;14:1246983
ATACAmp: a tool for detecting ecDNA/HSRs from bulk and single-cell ATAC-seq data.37950200 · Cheng, Hansen, Ma, Wenhao, Wang, Kun et al.2023 · 13 citationsBMC genomics. 2023;24(1):678
Exploring the Landscape of Spatial Transcriptome Analysis: Introducing STASH, a Database of Spatial Transcriptome Tools10.1101/2023.04.20.537419v1 · Chu, H., Wang, k., Cheng, H. et al.2023 · 2 citationsbioRxiv
ESCCdb: A comprehensive database and key regulator exploring platform based on cross dataset comparisons for esophageal squamous cell carcinoma.36968016 · Yang, Jian, Bi, Liyun, Wang, Chen et al.2023 · 3 citationsComputational and structural biotechnology journal. 2023;21:2119-2128
Chromothripsis is correlated with reduced cytotoxic immune infiltration and diminished responsiveness to checkpoint blockade immunotherapy.36923532 · Chu, Han, Jin, Zheng, Cheng, Jia-Nan et al.2023 · 7 citationsTheranostics. 2023;13(4):1443-1453
Multi-region sequencing depicts intratumor heterogeneity and clonal evolution in cervical cancer.36635412 · Wang, Chen, Bai, Rui, Liu, Yu et al.2023 · 11 citationsMedical oncology (Northwood, London, England). 2023;40(2):78
MALAT1 modulates alternative splicing by cooperating with the splicing factors PTBP1 and PSF.36563164 · Miao, Hui, Wu, Fan, Li, Yu et al.2022 · 63 citationsScience advances. 2022;8(51):eabq7289
Dental niche cells directly contribute to tooth reconstitution and morphogenesis.36476878 · Hu, Hong, Duan, Yufeng, Wang, Kun et al.2022 · 49 citationsCell reports. 2022;41(10):111737
Heterozygotic Brca1 mutation initiates mouse genome instability at embryonic stage.35869059 · Wu, Xiaobing, Guo, Maoni, Cui, Jian et al.2022 · 9 citationsOncogenesis. 2022;11(1):41
PCR Primer Design for the Rapidly Evolving SARS-CoV-2 Genome.34773624 · Qu, Wubin, Li, Jiangyu, Cai, Haoyang et al.2021 · 5 citationsMethods in molecular biology (Clifton, N.J.). 2022;2392:185-197
Postmastectomy radiation therapy can improve survival for breast cancer patients with 1-3 positive axillary lymph nodes: a retrospective cohort study using the SEER database.35116521 · Yang, Jian, Zhang, Xiao, Ye, Yifeng et al.2022 · 4 citationsTranslational cancer research. 2021;10(5):1984-2001
The Landscape of Somatic Copy Number Alterations in Head and Neck Squamous Cell Carcinoma.32226775 · Yang, Jian, Chen, Yi, Luo, Hong et al.2020 · 24 citationsFrontiers in oncology. 2020;10:321
Insight into unique somitogenesis of yak (Bos grunniens) with one additional thoracic vertebra.32131721 · Wang, Yu, Cai, Haoyang, Luo, Xiaolin et al.2020 · 16 citationsBMC genomics. 2020;21(1):201
CancerTracer: a curated database for intrapatient tumor heterogeneity.31701131 · Wang, Chen, Yang, Jian, Luo, Hong et al.2020 · 15 citationsNucleic acids research. 2020;48(D1):D797-D806
Genome-wide somatic copy number alteration analysis and database construction for cervical cancer.31901979 · Luo, Hong, Xu, Xiaohan, Yang, Jian et al.2020 · 17 citationsMolecular genetics and genomics : MGG. 2020;295(3):765-773
Comprehensive identification and characterization of somatic copy number alterations in triple‑negative breast cancer.31894314 · Li, Zaibing, Zhang, Xiao, Hou, Chenxin et al.2020 · 20 citationsInternational journal of oncology. 2020;56(2):522-530
MFEprimer-3.0: quality control for PCR primers.31066442 · Wang, Kun, Li, Haiwei, Xu, Yue et al.2020 · 105 citationsNucleic acids research. 2019;47(W1):W610-W613
Effect of radiotherapy on the survival of cervical cancer patients: An analysis based on SEER database.31348242 · Yang, Jian, Cai, Haoyang, Xiao, Zhi-Xiong et al.2019 · 56 citationsMedicine. 2019;98(30):e16421
Deciphering the Rules of in Silico Autophagy Methods for Expediting Medicinal Research.30888814 · Chen, Yi, Wang, Guan, Cai, Haoyang et al.2020 · 9 citationsJournal of medicinal chemistry. 2019;62(15):6831-6842
NAD(P)H: Quinone oxidoreductase 1 overexpression in hepatocellular carcinoma potentiates apoptosis evasion through regulating stabilization of X-linked inhibitor of apoptosis protein.30867140 · Li, Wan-Yu, Zhou, Hong-Zhong, Chen, Yao et al.2020 · 27 citationsCancer letters. 2019;451:156-167
[Influence of fracture resistance of prosthesis with different thickness of ferrule restored with fiber post and resin core and crown].30419658 · Yang, S Y, Zeng, Y X, Cai, H et al.2019 · 1 citationZhonghua kou qiang yi xue za zhi = Zhonghua kouqiang yixue zazhi = Chinese journal of stomatology. 2018;53(11):766-770
Young age is an independent adverse prognostic factor in early stage breast cancer: a population-based study.30310322 · Zhang, Xiao, Yang, Jian, Cai, Haoyang et al.2022 · 35 citationsCancer management and research. 2018;10:4005-4018
MethCNA: a database for integrating genomic and epigenomic data in human cancer.29433427 · Deng, Gaofeng, Yang, Jian, Zhang, Qing et al.2018 · 15 citationsBMC genomics. 2018;19(1):138
Chromothripsis Detection and Characterization Using the CTLPScanner Web Server.29564830 · Yang, Jian, Liu, Bo, Cai, Haoyang2019 · 2 citationsMethods in molecular biology (Clifton, N.J.). 2018;1769:265-278
ChromothripsisDB: A Curated Database for the Documentation, Visualization, and Mining of Chromothripsis Data.29564831 · Cai, Haoyang2019 · 6 citationsMethods in molecular biology (Clifton, N.J.). 2018;1769:279-289
Autophagic compound database: A resource connecting autophagy-modulating compounds, their potential targets and relevant diseases.29094410 · Deng, Yiqi, Zhu, Lingjuan, Cai, Haoyang et al.2018 · 38 citationsCell proliferation. 2018;51(3):e12403
Career total: 92 works. 64 are in this corpus.Showing the 50 most recent.
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