BR
B. Rotter
Gene Expression ProfilingTranscriptomeCD14CD16Epigenesis, GeneticMACEMonocyte subsetsRNA-Seqastro-ph.HECOVID-19
On Valency
published · living versionsW_tf4ky2pu·v1 · currentpublished
Observation of an Unusual Upward-going Cosmic-ray-like Event in the Third Flight of ANITA
with P. W. Gorham, P. Allison, O. Banerjee, L. Batten +58
1 version
Preprints & journals
61 papers in the corpus · 2004–2026Transcriptome Profiling of Induced Sputum Identified Upregulated TNF-α/NF-κB Signalling and Downregulated Mitochondrial Respiratory Chain Function in Post-Infectious Bronchiolitis Obliterans.42194095 · Jerkic, Silvija P, Naegele, Karen, Gronau, Lucia et al.2026 · 0 citationsBiomolecules. 2026;16(5)
Comprehensive analysis of secretome and transcriptome stability of Wharton jelly mesenchymal stromal cells during good manufacturing practice-compliant production.39306795 · Cañas-Arboleda, Mariana, Galindo, Cristian Camilo, Cruz-Barrera, Monica et al.2024 · 7 citationsCytotherapy. 2025;27(1):107-120
Correction: The Swine Plasma Metabolome Chronicles "Many Days" Biological Timing and Functions Linked to Growth.38564617 · Bromage, Timothy G, Idaghdour, Youssef, Lacruz, Rodrigo S et al.2024 · 1 citationPloS one. 2024;19(4):e0301870
LUBAC-mediated M1 Ub regulates necroptosis by segregating the cellular distribution of active MLKL.38245534 · Weinelt, Nadine, Wächtershäuser, Kaja Nicole, Celik, Gulustan et al.2024 · 18 citationsCell death & disease. 2024;15(1):77
Species-specific LUBAC-mediated M1 ubiquitination regulates necroptosis by segregating the cellular distribution and fate of activated MLKL10.1101/2022.12.08.519265v2 · Weinelt, N., Waechtershaeuser, K. N., Smith, S. et al.2022 · 2 citationsbioRxiv
Bulked segregant transcriptome analysis in pea identifies key expression markers for resistance to Peyronellaea pinodes.36307494 · Fondevilla, Sara, Krezdorn, Nicolas, Rubiales, Diego et al.2022 · 11 citationsScientific reports. 2022;12(1):18159
Cardiac SARS-CoV-2 infection is associated with pro-inflammatory transcriptomic alterations within the heart.34647998 · Bräuninger, Hanna, Stoffers, Bastian, Fitzek, Antonia D E et al.2022 · 71 citationsCardiovascular research. 2022;118(2):542-555
The methylome in females with adolescent Conduct Disorder: Neural pathomechanisms and environmental risk factors.35089926 · Chiocchetti, Andreas G, Yousaf, Afsheen, Waltes, Regina et al.2022 · 6 citationsPloS one. 2022;17(1):e0261691
Unusual Near-Horizon Cosmic-Ray-like Events Observed by ANITA-IV.33666466 · Gorham, P W, Ludwig, A, Deaconu, C et al.2021 · 34 citationsPhysical review letters. 2021;126(7):071103
Optimized qRT-PCR Approach for the Detection of Intra- and Extra-Cellular SARS-CoV-2 RNAs.32575728 · Toptan, Tuna, Hoehl, Sebastian, Westhaus, Sandra et al.2020 · 80 citationsInternational journal of molecular sciences. 2020;21(12)
Epigenetics in non-classical monocytes support their pro-inflammatory gene expression.32517883 · Zhang, Lu, Hofer, Thomas P, Zawada, Adam M et al.2021 · 9 citationsImmunobiology. 2020;225(3):151958
Blue Light Sensing in Listeria monocytogenes Is Temperature-Dependent and the Transcriptional Response to It Is Predominantly SigB-Dependent.31798538 · Dorey, Amber L, Lee, Bo-Hyung, Rotter, Bjorn et al.2020 · 24 citationsFrontiers in microbiology. 2019;10:2497
Exploring Listeria monocytogenes Transcriptomes in Correlation with Divergence of Lineages and Virulence as Measured in Galleria mellonella.31471303 · Lee, Bo-Hyung, Garmyn, Dominique, Gal, Laurent et al.2020 · 18 citationsApplied and environmental microbiology. 2019;85(21)
Gene Expression Profiling and Fine Mapping Identifies a Gibberellin 2-Oxidase Gene Co-segregating With the Dominant Dwarfing Gene Ddw1 in Rye (Secale cereale L.).31333700 · Braun, Eva-Maria, Tsvetkova, Natalia, Rotter, Björn et al.2023 · 40 citationsFrontiers in plant science. 2019;10:857
Mapping-by-sequencing using NGS-based 3'-MACE-Seq reveals a new mutant allele of the essential nodulation gene Sym33 (IPD3) in pea (Pisum sativum L.).30972251 · Zhernakov, Aleksandr I, Shtark, Oksana Y, Kulaeva, Olga A et al.2024 · 12 citationsPeerJ. 2019;7:e6662
Loss of the Chr16p11.2 ASD candidate gene QPRT leads to aberrant neuronal differentiation in the SH-SY5Y neuronal cell model.30443311 · Haslinger, Denise, Waltes, Regina, Yousaf, Afsheen et al.2018 · 41 citationsMolecular autism. 2018;9:56
Observation of an Unusual Upward-Going Cosmic-Ray-like Event in the Third Flight of ANITA.30387639 · Gorham, P W, Rotter, B, Allison, P et al.2018 · 136 citationsPhysical review letters. 2018;121(16):161102
First genetic linkage map of Lathyrus cicera based on RNA sequencing-derived markers: Key tool for genetic mapping of disease resistance.30181885 · Santos, Carmen, Almeida, Nuno Felipe, Alves, Mara Lisa et al.2022 · 26 citationsHorticulture research. 2018;5:45
Functional characterization of the Hyles euphorbiae hawkmoth transcriptome reveals strong expression of phorbol ester detoxification and seasonal cold hardiness genes.29743927 · Barth, M Benjamin, Buchwalder, Katja, Kawahara, Akito Y et al.2022 · 26 citationsFrontiers in zoology. 2018;15:20
Precision medicine for hepatocelluar carcinoma using molecular pattern diagnostics: results from a preclinical pilot study.28594404 · Agarwal, Rahul, Cao, Yuan, Hoffmeier, Klaus et al.2018 · 9 citationsCell death & disease. 2017;8(6):e2867
Reprint of: MicroRNA profiling of human intermediate monocytes.28578934 · Zawada, Adam M, Zhang, Lu, Emrich, Insa E et al.2018 · 5 citationsImmunobiology. 2017;222(6):831-840
A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.).28487704 · Hradilová, Iveta, Trněný, Oldřich, Válková, Markéta et al.2024 · 83 citationsFrontiers in plant science. 2017;8:542
The soybean GmSNAP18 gene underlies two types of resistance to soybean cyst nematode.28345654 · Liu, Shiming, Kandoth, Pramod K, Lakhssassi, Naoufal et al.2018 · 138 citationsNature communications. 2017;8:14822
Massive Analysis of cDNA Ends (MACE) for transcript-based marker design in pea (Pisum sativum L.).28050346 · Zhernakov, Aleksandr, Rotter, Björn, Winter, Peter et al.2024 · 13 citationsGenomics data. 2017;11:75-76
MicroRNA profiling of human intermediate monocytes.27876379 · Zawada, Adam M, Zhang, Lu, Emrich, Insa E et al.2017 · 23 citationsImmunobiology. 2017;222(3):587-596
Massive analysis of cDNA ends (MACE) reveals a co-segregating candidate gene for LpPg1 stem rust resistance in perennial ryegrass (Lolium perenne).27435735 · Bojahr, Jens, Nhengiwa, Ottilia, Krezdorn, Nicolas et al.2017 · 15 citationsTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2016;129(10):1915-32
DNA methylation profiling reveals differences in the 3 human monocyte subsets and identifies uremia to induce DNA methylation changes during differentiation.27018948 · Zawada, Adam M, Schneider, Jenny S, Michel, Anne I et al.2017 · 37 citationsEpigenetics. 2016;11(4):259-72
Impact of individual intravenous iron preparations on the differentiation of monocytes towards macrophages and dendritic cells.27190361 · Fell, Lisa H, Seiler-Mußler, Sarah, Sellier, Alexander B et al.2017 · 26 citationsNephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. 2016;31(11):1835-1845
The Swine Plasma Metabolome Chronicles "Many Days" Biological Timing and Functions Linked to Growth.26735517 · Bromage, Timothy G, Idaghdour, Youssef, Lacruz, Rodrigo S et al.2016 · 44 citationsPloS one. 2016;11(1):e0145919
In planta Identification of Putative Pathogenicity Factors from the Chickpea Pathogen Ascochyta rabiei by De novo Transcriptome Sequencing Using RNA-Seq and Massive Analysis of cDNA Ends.26648917 · Fondevilla, Sara, Krezdorn, Nicolas, Rotter, Björn et al.2015 · 26 citationsFrontiers in microbiology. 2015;6:1329
slan-defined subsets of CD16-positive monocytes: impact of granulomatous inflammation and M-CSF receptor mutation.26443621 · Hofer, Thomas P, Zawada, Adam M, Frankenberger, Marion et al.2016 · 134 citationsBlood. 2015;126(24):2601-10
Identification of novel small ncRNAs in pollen of tomato.26385469 · Bokszczanin, Kamila Lucia, Krezdorn, Nicolas, Fragkostefanakis, Sotirios et al.2016 · 33 citationsBMC genomics. 2015;16:714
Erratum to: Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer.26227492 · Müller, Sören, Raulefs, Susanne, Bruns, Philipp et al.2015 · 204 citationsMolecular cancer. 2015;14:144
Characterization and mapping of LanrBo: a locus conferring anthracnose resistance in narrow-leafed lupin (Lupinus angustifolius L.).26169875 · Fischer, Kristin, Dieterich, Regine, Nelson, Matthew N et al.2015 · 30 citationsTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2015;128(10):2121-30
Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer.25910082 · Müller, Sören, Raulefs, Susanne, Bruns, Philipp et al.2016 · 250 citationsMolecular cancer. 2015;14:94
Dual 3'Seq using deepSuperSAGE uncovers transcriptomes of interacting Salmonella enterica Typhimurium and human host cells.25927313 · Afonso-Grunz, Fabian, Hoffmeier, Klaus, Müller, Sören et al.2016 · 12 citationsBMC genomics. 2015;16:323
Lathyrus sativus transcriptome resistance response to Ascochyta lathyri investigated by deepSuperSAGE analysis.25852725 · Almeida, Nuno F, Krezdorn, Nicolas, Rotter, Björn et al.2015 · 53 citationsFrontiers in plant science. 2015;6:178
IL-37 requires the receptors IL-18Rα and IL-1R8 (SIGIRR) to carry out its multifaceted anti-inflammatory program upon innate signal transduction.25729923 · Nold-Petry, Claudia A, Lo, Camden Y, Rudloff, Ina et al.2015 · 440 citationsNature immunology. 2015;16(4):354-65
Allelic diversity in the transcriptomes of contrasting rust-infected genotypes of Lathyrus sativus, a lasting resource for smart breeding.25522779 · Almeida, Nuno Felipe, Leitão, Susana Trindade, Krezdorn, Nicolas et al.2015 · 49 citationsBMC plant biology. 2014;14:376
ANTIDotE: anti-tick vaccines to prevent tick-borne diseases in Europe.24559082 · Sprong, Hein, Trentelman, Jos, Seemann, Ingar et al.2015 · 51 citationsParasites & vectors. 2014;7:77
DNA fingerprinting in botany: past, present, future.24386986 · Nybom, Hilde, Weising, Kurt, Rotter, Björn2014 · 225 citationsInvestigative genetics. 2014;5(1):1
APADB: a database for alternative polyadenylation and microRNA regulation events.25052703 · Müller, Sören, Rycak, Lukas, Afonso-Grunz, Fabian et al.2015 · 97 citationsDatabase : the journal of biological databases and curation. 2014;2014
Comparative transcript profiling by SuperSAGE identifies novel candidate genes for controlling potato quantitative resistance to late blight not compromised by late maturity.24294214 · Draffehn, Astrid M, Li, Li, Krezdorn, Nicolas et al.2013 · 40 citationsFrontiers in plant science. 2013;4:423
Combinatory microarray and SuperSAGE analyses identify pairing-dependently transcribed genes in Schistosoma mansoni males, including follistatin.24244773 · Leutner, Silke, Oliveira, Katia C, Rotter, Björn et al.2015 · 51 citationsPLoS neglected tropical diseases. 2013;7(11):e2532
Massive analysis of cDNA Ends (MACE) and miRNA expression profiling identifies proatherogenic pathways in chronic kidney disease.24184689 · Zawada, Adam M, Rogacev, Kyrill S, Müller, Sören et al.2015 · 114 citationsEpigenetics. 2014;9(1):161-72
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data.23946503 · Müller, Sören, Rycak, Lukas, Winter, Peter et al.2014 · 69 citationsBioinformatics (Oxford, England). 2013;29(20):2651-2
Evidence of complement genes in the sea-star Asterias rubens. Comparisons with the sea urchin.23454737 · Leclerc, Michel, Kresdorn, Nicolas, Rotter, Björn2013 · 12 citationsImmunology letters. 2013;151(1-2):68-70
SuperTAG methylation-specific digital karyotyping reveals uremia-induced epigenetic dysregulation of atherosclerosis-related genes.23074332 · Zawada, Adam M, Rogacev, Kyrill S, Hummel, Björn et al.2013 · 47 citationsCirculation. Cardiovascular genetics. 2012;5(6):611-20
Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis.22971109 · Lenz, Tobias L, Eizaguirre, Christophe, Rotter, Björn et al.2013 · 89 citationsMolecular ecology. 2013;22(3):774-86
SuperSAGE evidence for CD14++CD16+ monocytes as a third monocyte subset.21803849 · Zawada, Adam M, Rogacev, Kyrill S, Rotter, Björn et al.2011 · 561 citationsBlood. 2011;118(12):e50-61
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