FV
Francesco Vezzi
High-Throughput Nucleotide SequencingSoftwareAlgorithmsHematopoietic Stem Cell TransplantationNGSq-bio.GNancient DNAArsenicbalanced chromosomal aberrationbioinformatics
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
28 papers in the corpus · 2011–2025Interpreting immune evasion: a novel assay for HLA loss detection.40666528 · Pettersson, Linnéa, Westerling, Sofia, Ramezanali, Hamid et al.2025 · 1 citationFrontiers in immunology. 2025;16:1603188
Development and performance of a next generation sequencing (NGS) assay for monitoring of mixed chimerism.33227269 · Pettersson, Linnea, Vezzi, Francesco, Vonlanthen, Sofie et al.2021 · 46 citationsClinica chimica acta; international journal of clinical chemistry. 2021;512:40-48
Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.30848092 · van der Valk, Tom, Vezzi, Francesco, Ormestad, Mattias et al.2021 · 142 citationsMolecular ecology resources. 2020;20(5):1171-1181
Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements.30735495 · Eisfeldt, Jesper, Pettersson, Maria, Vezzi, Francesco et al.2019 · 48 citationsPLoS genetics. 2019;15(2):e1007858
Replicative and non-replicative mechanisms in the formation of clustered CNVs are indicated by whole genome characterization.30419018 · Nazaryan-Petersen, Lusine, Eisfeldt, Jesper, Pettersson, Maria et al.2019 · 39 citationsPLoS genetics. 2018;14(11):e1007780
De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data.30304863 · Ameur, Adam, Che, Huiwen, Martin, Marcel et al.2019 · 58 citationsGenes. 2018;9(10)
High-resolution detection of chromosomal rearrangements in leukemias through mate pair whole genome sequencing.29529047 · Tran, Anh Nhi, Taylan, Fulya, Zachariadis, Vasilios et al.2018 · 13 citationsPloS one. 2018;13(3):e0193928
SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population.28832569 · Ameur, Adam, Dahlberg, Johan, Olason, Pall et al.2018 · 209 citationsEuropean journal of human genetics : EJHG. 2017;25(11):1253-1260
Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies10.1101/179028v3 · van der Valk, T., Vezzi, F., Ormestad, M. et al.2017 · 14 citationsbioRxiv
TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data.28781756 · Eisfeldt, Jesper, Vezzi, Francesco, Olason, Pall et al.2019 · 130 citationsF1000Research. 2017;6:664
Whole-Genome Sequencing of Cytogenetically Balanced Chromosome Translocations Identifies Potentially Pathological Gene Disruptions and Highlights the Importance of Microhomology in the Mechanism of Formation.27862604 · Nilsson, Daniel, Pettersson, Maria, Gustavsson, Peter et al.2018 · 74 citationsHuman mutation. 2017;38(2):180-192
Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women.27838757 · Engström, Karin, Wojdacz, Tomasz K, Marabita, Francesco et al.2017 · 30 citationsArchives of toxicology. 2017;91(5):2067-2078
Recommendations on e-infrastructures for next-generation sequencing.27267963 · Spjuth, Ola, Bongcam-Rudloff, Erik, Dahlberg, Johan et al.2017 · 22 citationsGigaScience. 2016;5:26
Evolutionary history of host use, rather than plant phylogeny, determines gene expression in a generalist butterfly.26956800 · Celorio-Mancera, Maria de la Paz, Wheat, Christopher W, Huss, Mikael et al.2016 · 43 citationsBMC evolutionary biology. 2016;16:59
Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.26961371 · Prezza, Nicola, Vezzi, Francesco, Käller, Max et al.2016 · 14 citationsBMC bioinformatics. 2016;17 Suppl 4:69
De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping.26617983 · Olsen, Remi-Andre, Bunikis, Ignas, Tiukova, Ievgeniia et al.2016 · 30 citationsGigaScience. 2015;4:56
T-cell receptor-HLA-DRB1 associations suggest specific antigens in pulmonary sarcoidosis.26585430 · Grunewald, Johan, Kaiser, Ylva, Ostadkarampour, Mahyar et al.2016 · 79 citationsThe European respiratory journal. 2016;47(3):898-909
CTNND2-a candidate gene for reading problems and mild intellectual disability.25473103 · Hofmeister, Wolfgang, Nilsson, Daniel, Topa, Alexandra et al.2016 · 39 citationsJournal of medical genetics. 2015;52(2):111-22
BESST--efficient scaffolding of large fragmented assemblies.25128196 · Sahlin, Kristoffer, Vezzi, Francesco, Nystedt, Björn et al.2014 · 155 citationsBMC bioinformatics. 2014;15:281
Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools.24906298 · Alexeyenko, Andrey, Nystedt, Björn, Vezzi, Francesco et al.2015 · 11 citationsBMC genomics. 2014;15:439
GRM1 is upregulated through gene fusion and promoter swapping in chondromyxoid fibroma.24658000 · Nord, Karolin H, Lilljebjörn, Henrik, Vezzi, Francesco et al.2014 · 103 citationsNature genetics. 2014;46(5):474-7
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
The Norway spruce genome sequence and conifer genome evolution.23698360 · Nystedt, Björn, Street, Nathaniel R, Wetterbom, Anna et al.2013 · 1,467 citationsNature. 2013;497(7451):579-84
GAM-NGS: genomic assemblies merger for next generation sequencing.23815503 · Vicedomini, Riccardo, Vezzi, Francesco, Scalabrin, Simone et al.2013 · 98 citationsBMC bioinformatics. 2013;14 Suppl 7:S6
Feature-by-feature--evaluating de novo sequence assembly.22319599 · Vezzi, Francesco, Narzisi, Giuseppe, Mishra, Bud2012 · 60 citationsPloS one. 2012;7(2):e31002
GapFiller: a de novo assembly approach to fill the gap within paired reads.23095524 · Nadalin, Francesca, Vezzi, Francesco, Policriti, Alberto2013 · 353 citationsBMC bioinformatics. 2012;13 Suppl 14:S8
Reevaluating assembly evaluations with feature response curves: GAGE and assemblathons.23284938 · Vezzi, Francesco, Narzisi, Giuseppe, Mishra, Bud2013 · 103 citationsPloS one. 2012;7(12):e52210
rNA: a fast and accurate short reads numerical aligner.22084252 · Vezzi, Francesco, Del Fabbro, Cristian, Tomescu, Alexandru I et al.2012 · 40 citationsBioinformatics (Oxford, England). 2012;28(1):123-4
Career total: 87 works. 28 are in this corpus.
Profile built from the corpus for this byline.
Author records are still filling in while the Hub is in alpha. If this is your page, you'll be able to claim it soon. Spot a mistake? Tell us.