FR
Flavio Romano
cond-mat.softq-bio.BMMolecular Dynamics Simulationphysics.bio-phphysics.chem-phself-assemblycoarse-grained modelingcond-mat.stat-mechDNA nanotechnologyDNA origami
On Valency
published · living versionsW_qszx4489·v1 · currentpublished
Coarse-grained modelling of strong DNA bending I: Thermodynamics and comparison to an experimental "molecular vice"
with Ryan M. Harrison, Thomas E. Ouldridge, Ard A. Louis, Jonathan P. K. Doye
1 version
Preprints & journals
45 papers in the corpus · 2007–2026Programmable selection of tetrahedral crystal lattices from a single nanoscale scaffold10.26434/chemrxiv.15004426/v1 · Hao Liu, Camilla Beneduce, Andreas Neophytou et al.2026 · 0 citationsChemRxiv
Falsifiability Test for Classical Nucleation Theory.40279611 · Beneduce, Camilla, Pinto, Diogo E P, Rovigatti, Lorenzo et al.2025 · 7 citationsPhysical review letters. 2025;134(14):148201
A Falsifiability Test for Classical Nucleation Theory2503.23124v1 · Camilla Beneduce, Diogo E. P. Pinto, Lorenzo Rovigatti et al.2025 · 0 citationsarXiv
Inverse design of a pyrochlore lattice of DNA origami through model-driven experiments.38753798 · Liu, Hao, Matthies, Michael, Russo, John et al.2024 · 93 citationsScience (New York, N.Y.). 2024;384(6697):776-781
Janus helices: From fully attractive to hard helices.37921252 · Dal Compare, Laura, Romano, Flavio, Wood, Jared A et al.2023 · 4 citationsThe Journal of chemical physics. 2023;159(17)
The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami.37166713 · Doye, Jonathan P K, Fowler, Hannah, Prešern, Domen et al.2023 · 31 citationsMethods in molecular biology (Clifton, N.J.). 2023;2639:93-112
A simple solution to the problem of self-assembling cubic diamond crystals.36129342 · Rovigatti, Lorenzo, Russo, John, Romano, Flavio et al.2022 · 22 citationsNanoscale. 2022;14(38):14268-14275
SAT-assembly: a new approach for designing self-assembling systems.35148521 · Russo, John, Romano, Flavio, Kroc, Lukáš et al.2022 · 27 citationsJournal of physics. Condensed matter : an Institute of Physics journal. 2022;34(35)
How perfluoroalkyl substances modify fluorinated self-assembled monolayer architectures: An electrochemical and computational study.35397910 · Moro, Giulia, Dongmo Foumthuim, Cedrix J, Spinaci, Marco et al.2022 · 18 citationsAnalytica chimica acta. 2022;1204:339740
Free-energy landscapes of DNA and its assemblies: Perspectives from coarse-grained modelling2111.10166v1 · Jonathan P. K. Doye, Ard A. Louis, John S. Schreck et al.2021 · 2 citationsFrontiers of Nanoscience, Vol. 21, Ch. 9, pp 195-210 (2022)
Designing Patchy Interactions to Self-Assemble Arbitrary Structures.32975991 · Romano, Flavio, Russo, John, Kroc, Lukáš et al.2020 · 43 citationsPhysical review letters. 2020;125(11):118003
Measuring internal forces in single-stranded DNA: Application to a DNA force clamp2007.13865v1 · Megan C. Engel, Flavio Romano, Ard A. Louis et al.2020 · 10 citationsJ. Chem. Theor. Comput. 16, 7764-7775 (2020)
Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model.31282669 · Harrison, Ryan M, Romano, Flavio, Ouldridge, Thomas E et al.2019 · 33 citationsJournal of chemical theory and computation. 2019;15(8):4660-4672
TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami.31301183 · Suma, Antonio, Poppleton, Erik, Matthies, Michael et al.2020 · 108 citationsJournal of computational chemistry. 2019;40(29):2586-2595
Proof-of-Concept Multistage Biomimetic Liposomal DNA Origami Nanosystem for the Remote Loading of Doxorubicin.30996789 · Palazzolo, Stefano, Hadla, Mohamad, Spena, Concetta Russo et al.2020 · 49 citationsACS medicinal chemistry letters. 2019;10(4):517-521
Topical Issue on Advances in Computational Methods for Soft Matter Systems.30143882 · Rovigatti, Lorenzo, Romano, Flavio, Russo, John2019 · 3 citationsThe European physical journal. E, Soft matter. 2018;41(8):98
Force-Induced Unravelling of DNA Origami.29851456 · Engel, Megan C, Smith, David M, Jobst, Markus A et al.2019 · 62 citationsACS nano. 2018;12(7):6734-6747
How to simulate patchy particles⋆.29748868 · Rovigatti, Lorenzo, Russo, John, Romano, Flavio2018 · 55 citationsThe European physical journal. E, Soft matter. 2018;41(5):59
Characterizing the Motion of Jointed DNA Nanostructures Using a Coarse-Grained Model.29083876 · Sharma, Rahul, Schreck, John S, Romano, Flavio et al.2019 · 50 citationsACS nano. 2017;11(12):12426-12435
Re-entrant DNA gels.27767029 · Bomboi, Francesca, Romano, Flavio, Leo, Manuela et al.2018 · 88 citationsNature communications. 2016;7:13191
Self-assembly of two-dimensional binary quasicrystals: A possible route to a DNA quasicrystal1607.06626v1 · Aleks Reinhardt, John S. Schreck, Flavio Romano et al.2016 · 29 citationsJ. Phys.: Condens. Matter 29, 014006 (2017)
Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.27010928 · Schreck, John S, Romano, Flavio, Zimmer, Matthew H et al.2017 · 40 citationsACS nano. 2016;10(4):4236-47
Direct Simulation of the Self-Assembly of a Small DNA Origami.26766072 · Snodin, Benedict E K, Romano, Flavio, Rovigatti, Lorenzo et al.2016 · 99 citationsACS nano. 2016;10(2):1724-37
Coarse-grained modelling of strong DNA bending I: Thermodynamics and comparison to an experimental "molecular vice"1506.09005v1 · Ryan M. Harrison, Flavio Romano, Thomas E. Ouldridge et al.2015 · 7 citationsarXivon Valency
Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.26093573 · Snodin, Benedict E K, Randisi, Ferdinando, Mosayebi, Majid et al.2016 · 385 citationsThe Journal of chemical physics. 2015;142(23):234901
DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.26056172 · Schreck, John S, Ouldridge, Thomas E, Romano, Flavio et al.2015 · 57 citationsNucleic acids research. 2015;43(13):6181-90
Modelling toehold-mediated RNA strand displacement.25762335 · Šulc, Petr, Ouldridge, Thomas E, Romano, Flavio et al.2016 · 67 citationsBiophysical journal. 2015;108(5):1238-47
Switching bonds in a DNA gel: an all-DNA vitrimer.25763976 · Romano, Flavio, Sciortino, Francesco2015 · 43 citationsPhysical review letters. 2015;114(7):078104
A comparison between parallelization approaches in molecular dynamics simulations on GPUs.25355527 · Rovigatti, Lorenzo, Sulc, Petr, Reguly, István Z et al.2015 · 142 citationsJournal of computational chemistry. 2015;36(1):1-8
Influence of patch-size variability on the crystallization of tetrahedral patchy particles.25302921 · Romano, Flavio, Russo, John, Tanaka, Hajime2015 · 20 citationsPhysical review letters. 2014;113(13):138303
A nucleotide-level coarse-grained model of RNA.24952569 · Šulc, Petr, Romano, Flavio, Ouldridge, Thomas E et al.2015 · 161 citationsThe Journal of chemical physics. 2014;140(23):235102
New metastable form of ice and its role in the homogeneous crystallization of water.24836734 · Russo, John, Romano, Flavio, Tanaka, Hajime2014 · 214 citationsNature materials. 2014;13(7):733-9
Gels of DNA nanostars never crystallize.24646041 · Rovigatti, Lorenzo, Smallenburg, Frank, Romano, Flavio et al.2015 · 93 citationsACS nano. 2014;8(4):3567-74
Coarse-graining DNA for simulations of DNA nanotechnology.24121860 · Doye, Jonathan P K, Ouldridge, Thomas E, Louis, Ard A et al.2014 · 203 citationsPhysical chemistry chemical physics : PCCP. 2013;15(47):20395-414
Computing phase diagrams for a quasicrystal-forming patchy-particle system.23829745 · Reinhardt, Aleks, Romano, Flavio, Doye, Jonathan P K2013 · 59 citationsPhysical review letters. 2013;110(25):255503
Theoretical calculations of phase diagrams and self-assembly in patchy colloids1212.2430v1 · Achille Giacometti, Flavio Romano, Francesco Sciortino2012 · 22 citationsarXiv
Sequence-dependent thermodynamics of a coarse-grained DNA model.23039613 · Šulc, Petr, Romano, Flavio, Ouldridge, Thomas E et al.2013 · 339 citationsThe Journal of chemical physics. 2012;137(13):135101
Patterning symmetry in the rational design of colloidal crystals.22828635 · Romano, Flavio, Sciortino, Francesco2012 · 159 citationsNature communications. 2012;3:975
Phase diagram of trivalent and pentavalent patchy particles.22277769 · Romano, Flavio, Sanz, Eduardo, Tartaglia, Piero et al.2012 · 49 citationsJournal of physics. Condensed matter : an Institute of Physics journal. 2012;24(6):064113
Monte Carlo and event-driven dynamics of Brownian particles with orientational degrees of freedom.21974511 · Romano, Flavio, De Michele, Cristiano, Marenduzzo, Davide et al.2012 · 37 citationsThe Journal of chemical physics. 2011;135(12):124106
Crystallization of tetrahedral patchy particles in silico.21548694 · Romano, Flavio, Sanz, Eduardo, Sciortino, Francesco2011 · 135 citationsThe Journal of chemical physics. 2011;134(17):174502
Colloidal self-assembly: Patchy from the bottom up.21336295 · Romano, Flavio, Sciortino, Francesco2011 · 130 citationsNature materials. 2011;10(3):171-3
Crystal phases of two dimensional assembly of triblock Janus particles1101.3877v1 · Flavio Romano, Francesco Sciortino2011 · 0 citationsarXiv
Role of the range in the fluid-crystal coexistence for a patchy particle model.19852455 · Romano, Flavio, Sanz, Eduardo, Sciortino, Francesco2010 · 53 citationsThe journal of physical chemistry. B. 2009;113(46):15133-6
Gas-Liquid Coexistence in the Primitive Model for Watercond-mat/0703372v2 · F. Romano, P. Tartaglia, F. Sciortino2007 · 0 citationsJ. Phys.: Condens. Matter 19 (2007) 322101
Career total: 64 works. 45 are in this corpus.
Profile built from the corpus for this byline.
Author records are still filling in while the Hub is in alpha. If this is your page, you'll be able to claim it soon. Spot a mistake? Tell us.