DN
Delphine Naquin
microbiologyTn-seqAgrobacterium tumefaciensSolanum lycopersicumAgrobacteriumessential genesfitnessgallGenome, Chloroplastgrowth advantage
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
41 papers in the corpus · 2011–2026Carbon Metabolic Versatility of Agrobacterium tumefaciens in Tomato Roots and Galls.42019949 · Jeanne, Etienne, Torres, Marta, Quéro, Anthony et al.2026 · 1 citationEnvironmental microbiology. 2026;28(4):e70311
High-resolution HIV-1 m6A epitranscriptome reveals isoform-dependent methylation clusters and unique 2-LTR transcript modifications.41424760 · Naquin, Delphine, Blanchet, Sandra, van Dijk, Erwin et al.2025 · 4 citationsNAR genomics and bioinformatics. 2025;7(4):lqaf200
Tiarins, a diverse family of natural Trojan-horse aminoacyl-tRNA synthetase inhibitors discovered by genome mining10.64898/2025.12.02.691738v1 · Travin, D. Y., Livensky, A., Bikmetov, D. et al.2025 · 1 citationbioRxiv
Drosophila Sociality Influences Immune Peptide Load and Apoptosis-induced Tumor Suppression independently of the Antitumor Peptide Defensin10.1101/2025.10.21.683679v1 · Delamotte, P., Akiki, P., Poidevin, M. et al.2025 · 0 citationsbioRxiv
Development and characterization of a saturated transposon mutant library of Salmonella enterica serovar Enteritidis LA5.40422974 · Trotereau, Jérôme, Huguet, Anne-Sophie, Jouan, Romain et al.2025 · 1 citationMicrobiology resource announcements. 2025;14(6):e0131924
A bifunctional snoRNA with separable activities in guiding rRNA 2'-O-methylation and scaffolding gametogenesis effectors.40185772 · Leroy, Estelle, Challal, Drice, Pelletier, Stéphane et al.2025 · 6 citationsNature communications. 2025;16(1):3250
A single domain intrabody as a novel tool to bias the subcellular trafficking of the follicle-stimulating hormone receptor10.1101/2025.02.13.638052v1 · Raynaud, P., Gourdon, J., Jugnarain, V. et al.2025 · 1 citationbioRxiv
Single cell RNA-sequencing identifies the gene expression profile of the asexual and sexual invasive merozoites of the human malaria parasite10.1101/2024.09.26.614664v4 · Piel, L., Hernandez, C., Jaszczyszyn, Y. et al.2024 · 1 citationbioRxiv
Enhanced heterologous gene expression in Trichoderma reesei by promoting multicopy integration.39311996 · Mathis, Hugues, Naquin, Delphine, Margeot, Antoine et al.2024 · 8 citationsApplied microbiology and biotechnology. 2024;108(1):470
Transgressive phenotypes from outbreeding between the Trichoderma reesei hyper producer RutC30 and a natural isolate.39162516 · Chan Ho Tong, Laetitia, Jourdier, Etienne, Naquin, Delphine et al.2024 · 3 citationsMicrobiology spectrum. 2024;12(10):e0044124
Sulfur starvation-induced autophagy in Saccharomyces cerevisiae involves SAM-dependent signaling and transcription activator Met4.39138175 · Prigent, Magali, Jean-Jacques, Hélène, Naquin, Delphine et al.2024 · 14 citationsNature communications. 2024;15(1):6927
Maternal inheritance of functional centrioles in two parthenogenetic nematodes.39025889 · Perrier, Aurélien, Guiglielmoni, Nadège, Naquin, Delphine et al.2024 · 5 citationsNature communications. 2024;15(1):6042
Hundreds of antimicrobial peptides create a selective barrier for insect gut symbionts.38865264 · Lachat, Joy, Lextrait, Gaëlle, Jouan, Romain et al.2024 · 42 citationsProceedings of the National Academy of Sciences of the United States of America. 2024;121(25):e2401802121
Expression of Dystrophin Dp71 Splice Variants Is Temporally Regulated During Rodent Brain Development.38802640 · González-Reyes, Mayram, Aragón, Jorge, Sánchez-Trujillo, Alejandra et al.2024 · 10 citationsMolecular neurobiology. 2024;61(12):10883-10900
Transposon sequencing reveals the essential gene set and genes enabling gut symbiosis in the insect symbiont Caballeronia insecticola.38282642 · Jouan, Romain, Lextrait, Gaëlle, Lachat, Joy et al.2024 · 15 citationsISME communications. 2024;4(1):ycad001
Construction and characterization of a saturated Tn-seq library of Salmonella Typhimurium ATCC 14028.37795997 · Trotereau, Jérôme, Jouan, Romain, Naquin, Delphine et al.2023 · 3 citationsMicrobiology resource announcements. 2023;12(11):e0036523
Genomics in the long-read sequencing era.37230864 · van Dijk, Erwin L, Naquin, Delphine, Gorrichon, Kévin et al.2023 · 134 citationsTrends in genetics : TIG. 2023;39(9):649-671
Dissimilar gene repertoires of Dickeya solani involved in the colonization of lesions and roots of Solanum tuberosum.37223796 · Robic, Kévin, Munier, Euphrasie, Effantin, Géraldine et al.2023 · 13 citationsFrontiers in plant science. 2023;14:1154110
Construction of a Transposon Mutant Library in the Pathogen Agrobacterium tumefaciens C58 and Identification of Genes Involved in Gall Niche Exploitation and Colonization.36520396 · Torres, Marta, Gonzalez-Mula, Almudena, Naquin, Delphine et al.2022 · 0 citationsMethods in molecular biology (Clifton, N.J.). 2023;2605:209-226
Pervasive transcription enhances the accessibility of H-NS-silenced promoters and generates bistability in Salmonella virulence gene expression.35858437 · Figueroa-Bossi, Nara, Sánchez-Romero, María Antonia, Kerboriou, Patricia et al.2022 · 39 citationsProceedings of the National Academy of Sciences of the United States of America. 2022;119(30):e2203011119
Plesiomonas shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome.35078241 · Adam, Yazid, Brezellec, Pierre, Espinosa, Elena et al.2022 · 12 citationsGenome biology and evolution. 2022;14(2)
Agrobacterium tumefaciens fitness genes involved in the colonization of plant tumors and roots.34655498 · Torres, Marta, Jiquel, Audren, Jeanne, Etienne et al.2022 · 42 citationsThe New phytologist. 2022;233(2):905-918
Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals.32986833 · Policarpo, Maxime, Fumey, Julien, Lafargeas, Philippe et al.2021 · 86 citationsMolecular biology and evolution. 2021;38(2):589-605
Impact of the severity of negative energy balance on gene expression in the subcutaneous adipose tissue of periparturient primiparous Holstein dairy cows: Identification of potential novel metabolic signals for the reproductive system.31557215 · Mellouk, Namya, Rame, Christelle, Naquin, Delphine et al.2020 · 22 citationsPloS one. 2019;14(9):e0222954
Genome Sequences of 11 Conspecific Streptomyces sp. Strains.31537669 · Tidjani, Abdoul-Razak, Lorenzi, Jean-Noël, Toussaint, Maxime et al.2020 · 7 citationsMicrobiology resource announcements. 2019;8(38)
Massive Gene Flux Drives Genome Diversity between Sympatric Streptomyces Conspecifics.31481382 · Tidjani, Abdoul-Razak, Lorenzi, Jean-Noël, Toussaint, Maxime et al.2020 · 55 citationsmBio. 2019;10(5)
The biotroph Agrobacterium tumefaciens thrives in tumors by exploiting a wide spectrum of plant host metabolites.30447163 · Gonzalez-Mula, Almudena, Lachat, Joy, Mathias, Léo et al.2020 · 33 citationsThe New phytologist. 2019;222(1):455-467
The Third Revolution in Sequencing Technology.29941292 · van Dijk, Erwin L, Jaszczyszyn, Yan, Naquin, Delphine et al.2019 · 1,189 citationsTrends in genetics : TIG. 2018;34(9):666-681
Lifestyle of the biotroph Agrobacterium tumefaciens in the ecological niche constructed on its host plant.29701262 · González-Mula, Almudena, Lang, Julien, Grandclément, Catherine et al.2019 · 37 citationsThe New phytologist. 2018;219(1):350-362
Complete Sequence of the Intronless Mitochondrial Genome of the Saccharomyces cerevisiae Strain CW252.29700138 · Naquin, Delphine, Panozzo, Cristina, Dujardin, Geneviève et al.2020 · 4 citationsGenome announcements. 2018;6(17)
Systematic comparison of small RNA library preparation protocols for next-generation sequencing.29402217 · Dard-Dascot, Cloelia, Naquin, Delphine, d'Aubenton-Carafa, Yves et al.2018 · 123 citationsBMC genomics. 2018;19(1):118
First Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Derby Strain Associated with Pork in France.26227607 · Kérouanton, Annaëlle, Hirchaud, Edouard, Rose, Valérie et al.2015 · 17 citationsGenome announcements. 2015;3(4)
The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating.26182838 · Rousseau-Gueutin, M, Bellot, S, Martin, G E et al.2016 · 88 citationsMolecular phylogenetics and evolution. 2015;93:5-16
Suppression of Dwarf and irregular xylem Phenotypes Generates Low-Acetylated Biomass Lines in Arabidopsis.25888614 · Bensussan, Matthieu, Lefebvre, Valérie, Ducamp, Aloïse et al.2016 · 33 citationsPlant physiology. 2015;168(2):452-63
Unraveling the stratification of an iron-oxidizing microbial mat by metatranscriptomics.25033299 · Quaiser, Achim, Bodi, Xavier, Dufresne, Alexis et al.2015 · 38 citationsPloS one. 2014;9(7):e102561
CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data.24938393 · Naquin, Delphine, d'Aubenton-Carafa, Yves, Thermes, Claude et al.2014 · 53 citationsBMC bioinformatics. 2014;15:198
The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family.24769537 · Martin, Guillaume E, Rousseau-Gueutin, Mathieu, Cordonnier, Solenn et al.2015 · 105 citationsAnnals of botany. 2014;113(7):1197-210
Genome Sequence of Lactococcus lactis subsp. lactis bv. diacetylactis LD61.24435871 · Falentin, Hélène, Naquin, Delphine, Loux, Valentin et al.2014 · 14 citationsGenome announcements. 2014;2(1)
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae).23149455 · Ferreira de Carvalho, J, Poulain, J, Da Silva, C et al.2013 · 62 citationsHeredity. 2013;110(2):181-93
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
Career total: 78 works. 41 are in this corpus.
Profile built from the corpus for this byline.
Author records are still filling in while the Hub is in alpha. If this is your page, you'll be able to claim it soon. Spot a mistake? Tell us.