RV
Rami Vanguri
Magnetic resonance imagingbioinformaticsImage Processing, Computer-AssistedImmune Checkpoint InhibitorsLung NeoplasmsMachine learningMagnetic Resonance ImagingRectal cancerRectal NeoplasmsAdenocarcinoma
On Valency
published · living versionsW_ctyr365s·v1 · currentpublished
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
with Spyridon Bakas, Mauricio Reyes, Andras Jakab, Stefan Bauer +422
1 version
Preprints & journals
162 papers in the corpus · 2007–2026Lower airway microbiome transcriptional and metabolic activities influence responsiveness to immunotherapy in NSCLC.42905123 · Darawshy, Fares, Tsay, Jun-Chieh J, Sanchez, Elizabeth et al.2026 · 0 citationsCancer immunology research. 2026
A Novel Therapeutic Approach: Gamma Secretase Inhibitor Enhances Radiotherapy and Checkpoint Blockade Therapy via Reprogramming of the Tumor Microenvironment.42282538 · Wang, Qi, Banerjee, Debarshi, Connolly, Erin C et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Molecular profiling of sacral chordomas through methylation, spatial transcriptomics and multiplexed immunofluorescence.41924303 · Foong, Y H, Jour, G, Sinha, G et al.2026 · 0 citationsESMO rare cancers. 2026;5
Cellular interactions in the sentinel lymph node predict melanoma recurrence.41446197 · Solis, Sabrina M, Yang, Yang, Foong, Yee Hoon et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2025
Unbiased self supervised learning of kidney histology reveals phenotypic and prognostic insights.41062686 · Pandit, Krutika, Coudray, Nicolas, Quiros, Adalberto Claudio et al.2026 · 1 citationScientific reports. 2025;15(1):35131
Spatial biomarkers of response to eribulin plus pembrolizumab in patients with metastatic triple negative breast cancer in the ENHANCE-1 trial.40675997 · Foong, Yee Hoon, Wang, Qi, Kearney, Matthew et al.2025 · 3 citationsNPJ breast cancer. 2025;11(1):72
Phenotypic and prognostic insights through unbiased self-supervised learning on kidney histology10.1101/2025.06.09.25328891v1 · Pandit, K., Coudray, N., Quiros, A. C. et al.2025 · 0 citationsmedRxiv
Quantitatively defined stromal B cell aggregates are associated with response to checkpoint inhibitors in unresectable melanoma.40220297 · Smithy, James W, Peng, Xiyu, Ehrich, Fiona D et al.2025 · 6 citationsCell reports. 2025;44(4):115554
Reliability of rectal MRI radiomic features: Comparing rectal MRI radiomic features across reader expertise levels, image segmentation technique, and timing of rectal MRI in patients with locally advanced rectal cancer.40031376 · Charbel, Charlotte, Kwok, Henry C, Miranda, Joao et al.2025 · 1 citationEuropean journal of radiology. 2025;185:112019
Immune checkpoint landscape of human atherosclerosis and influence of cardiometabolic factors.39613875 · Barcia Durán, José Gabriel, Das, Dayasagar, Gildea, Michael et al.2024 · 42 citationsNature cardiovascular research. 2024;3(12):1482-1502
Lung Microbial and Host Genomic Signatures as Predictors of Prognosis in Early-Stage Adenocarcinoma.39225784 · Tsay, Jun-Chieh J, Darawshy, Fares, Wang, Chan et al.2024 · 7 citationsCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2024;33(11):1433-1444
Deformable Mapping of Rectal Cancer Whole-Mount Histology with Restaging MRI at Voxel Scale: A Feasibility Study.39452890 · Miranda, João, Heiselman, Jon S, Firat, Canan et al.2024 · 0 citationsRadiology. Imaging cancer. 2024;6(6):e240073
Spatial assessment of stromal B cell aggregates predicts response to checkpoint inhibitors in unresectable melanoma10.1101/2024.08.09.24311758v1 · Smithy, J. W., Peng, X., Ehrich, F. D. et al.2024 · 2 citationsmedRxiv
Automated classification of cellular expression in multiplexed imaging data with Nimbus.38895405 · Rumberger, J Lorenz, Greenwald, Noah F, Ranek, Jolene S et al.2025 · 23 citationsbioRxiv : the preprint server for biology. 2024
A longitudinal single-cell and spatial multiomic atlas of pediatric high-grade glioma.38496580 · Sussman, Jonathan H, Oldridge, Derek A, Yu, Wenbao et al.2026 · 10 citationsbioRxiv : the preprint server for biology. 2024
Weakly Supervised Deep Learning Predicts Immunotherapy Response in Solid Tumors Based on PD-L1 Expression.38126740 · Ligero, Marta, Serna, Garazi, El Nahhas, Omar S M et al.2024 · 22 citationsCancer research communications. 2024;4(1):92-102
Prediction of locally advanced rectal cancer response to neoadjuvant chemoradiation therapy using volumetric multiparametric MRI-based radiomics.38150143 · El Homsi, Maria, Bane, Octavia, Fauveau, Valentin et al.2024 · 8 citationsAbdominal radiology (New York). 2024;49(3):791-800
Integration of peripheral blood- and tissue-based biomarkers of response to immune checkpoint blockade in urothelial carcinoma.37667855 · Vanguri, Rami S, Smithy, James W, Li, Yanyun et al.2024 · 14 citationsThe Journal of pathology. 2023;261(3):349-360
Cross-platform dataset of multiplex fluorescent cellular object image annotations.37029126 · Aleynick, Nathaniel, Li, Yanyun, Xie, Yubin et al.2023 · 16 citationsScientific data. 2023;10(1):193
Ovarian cancer mutational processes drive site-specific immune evasion.36517593 · Vázquez-García, Ignacio, Uhlitz, Florian, Ceglia, Nicholas et al.2023 · 329 citationsNature. 2022;612(7941):778-786
Multimodal integration of radiology, pathology and genomics for prediction of response to PD-(L)1 blockade in patients with non-small cell lung cancer.36038778 · Vanguri, Rami S, Luo, Jia, Aukerman, Andrew T et al.2022 · 394 citationsNature cancer. 2022;3(10):1151-1164
Multimodal data integration using machine learning improves risk stratification of high-grade serous ovarian cancer.35764743 · Boehm, Kevin M, Aherne, Emily A, Ellenson, Lora et al.2022 · 356 citationsNature cancer. 2022;3(6):723-733
Tumor Immune Microenvironment and Response to Neoadjuvant Chemotherapy in Hormone Receptor/HER2+ Early Stage Breast Cancer.35610143 · Vanguri, Rami S, Fenn, Kathleen M, Kearney, Matthew R et al.2022 · 16 citationsClinical breast cancer. 2022;22(6):538-546
Deep Learning-Inferred Multiplex ImmunoFluorescence for Immunohistochemical Image Quantification.36118303 · Ghahremani, Parmida, Li, Yanyun, Kaufman, Arie et al.2024 · 144 citationsNature machine intelligence. 2022;4(4):401-412
Understanding the impact of chemotherapy on the immune landscape of high-grade serous ovarian cancer.35146104 · Vanguri, Rami, Benhamida, Jamal, Young, Jonathan H et al.2022 · 22 citationsGynecologic oncology reports. 2022;39:100926
Harnessing multimodal data integration to advance precision oncology.34663944 · Boehm, Kevin M, Khosravi, Pegah, Vanguri, Rami et al.2022 · 651 citationsNature reviews. Cancer. 2022;22(2):114-126
An exact test for significance of clusters in binary data2109.13876v2 · James Mathews, Cameron Crowe, Rami Vanguri et al.2021 · 2 citationsarXiv
3D Isotropic Super-resolution Prostate MRI Using Generative Adversarial Networks and Unpaired Multiplane Slices.34519954 · Liu, Yucheng, Liu, Yulin, Vanguri, Rami et al.2021 · 17 citationsJournal of digital imaging. 2021;34(5):1199-1208
Deep Learning-Inferred Multiplex ImmunoFluorescence for IHC Image Quantification10.1101/2021.05.01.442219v4 · Ghahremani, P., Li, Y., Kaufman, A. et al.2021 · 5 citationsbioRxiv
Automated digital TIL analysis (ADTA) adds prognostic value to standard assessment of depth and ulceration in primary melanoma.33531581 · Moore, Michael R, Friesner, Isabel D, Rizk, Emanuelle M et al.2021 · 26 citationsScientific reports. 2021;11(1):2809
Kaiso (ZBTB33) subcellular partitioning functionally links LC3A/B, the tumor microenvironment, and breast cancer survival.33526872 · Singhal, Sandeep K, Byun, Jung S, Park, Samson et al.2021 · 16 citationsCommunications biology. 2021;4(1):150
Radiomics of MRI for pretreatment prediction of pathologic complete response, tumor regression grade, and neoadjuvant rectal score in patients with locally advanced rectal cancer undergoing neoadjuvant chemoradiation: an international multicenter study.32500192 · Shaish, Hiram, Aukerman, Andrew, Vanguri, Rami et al.2021 · 128 citationsEuropean radiology. 2020;30(11):6263-6273
Channel width optimized neural networks for liver and vessel segmentation in liver iron quantification.32658724 · Liu, Michael, Vanguri, Rami, Mutasa, Simukayi et al.2021 · 20 citationsComputers in biology and medicine. 2020;122:103798
Convolutional Neural Network Detection of Axillary Lymph Node Metastasis Using Standard Clinical Breast MRI.32139272 · Ren, Thomas, Cattell, Renee, Duanmu, Hongyi et al.2021 · 59 citationsClinical breast cancer. 2020;20(3):e301-e308
Predicting the genetic ancestry of 2.6 million New York City patients using clinical data10.1101/768440v1 · Ramlall, V., Quinnies, K. M., Vanguri, R. et al.2019 · 0 citationsbioRxiv
Erratum to: Measurement of the W boson polarisation in t t ¯ events from pp collisions at s = 8 TeV in the lepton + jets channel with ATLAS.31187788 · Aaboud, M, Aad, G, Abbott, B et al.2023 · 23 citationsThe European physical journal. C, Particles and fields. 2019;79(1):19
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge1811.02629v3 · Spyridon Bakas, Mauricio Reyes, Andras Jakab et al.2018 · 1,441 citationsarXivon Valency
Disease Heritability Inferred from Familial Relationships Reported in Medical Records.29779949 · Polubriaginof, Fernanda C G, Vanguri, Rami, Quinnies, Kayla et al.2019 · 111 citationsCell. 2018;173(7):1692-1704.e11
Measurement of the W-boson mass in pp collisions at s = 7 TeV with the ATLAS detector.31265006 · Aaboud, M, Aad, G, Abbott, B et al.2024 · 276 citationsThe European physical journal. C, Particles and fields. 2018;78(2):110
Generative Adversarial Networks for Electronic Health Records: A Framework for Exploring and Evaluating Methods for Predicting Drug-Induced Laboratory Test Trajectories1712.00164v1 · Alexandre Yahi, Rami Vanguri, No'emie Elhadad et al.2017 · 34 citationsarXiv
A measurement of the calorimeter response to single hadrons and determination of the jet energy scale uncertainty using LHC Run-1 pp-collision data with the ATLAS detector.28260979 · Aaboud, M, Aad, G, Abbott, B et al.2024 · 45 citationsThe European physical journal. C, Particles and fields. 2017;77(1):26
Measurement of the [Formula: see text] and [Formula: see text] production cross sections in multilepton final states using 3.2 fb[Formula: see text] of [Formula: see text] collisions at [Formula: see text] = 13 TeV with the ATLAS detector.28260981 · Aaboud, M, Aad, G, Abbott, B et al.2023 · 48 citationsThe European physical journal. C, Particles and fields. 2017;77(1):40
Measurement of the prompt J/[Formula: see text] pair production cross-section in pp collisions at [Formula: see text] TeV with the ATLAS detector.28331429 · Aaboud, M, Aad, G, Abbott, B et al.2022 · 113 citationsThe European physical journal. C, Particles and fields. 2017;77(2):76
Search for triboson [Formula: see text] production in pp collisions at [Formula: see text] [Formula: see text] with the ATLAS detector.28331433 · Aaboud, M, Aad, G, Abbott, B et al.2024 · 31 citationsThe European physical journal. C, Particles and fields. 2017;77(3):141
Measurement of jet activity produced in top-quark events with an electron, a muon and two b-tagged jets in the final state in pp collisions at [Formula: see text] TeV with the ATLAS detector.28515663 · Aaboud, M, Aad, G, Abbott, B et al.2024 · 19 citationsThe European physical journal. C, Particles and fields. 2017;77(4):220
Performance of algorithms that reconstruct missing transverse momentum in [Formula: see text]= 8 TeV proton-proton collisions in the ATLAS detector.28515666 · Aad, G, Abbott, B, Abdallah, J et al.2024 · 77 citationsThe European physical journal. C, Particles and fields. 2017;77(4):241
Measurement of the W boson polarisation in [Formula: see text] events from pp collisions at [Formula: see text] = 8 TeV in the lepton + jets channel with ATLAS.28515670 · Aaboud, M, Aad, G, Abbott, B et al.2024 · 47 citationsThe European physical journal. C, Particles and fields. 2017;77(4):264
Electron efficiency measurements with the ATLAS detector using 2012 LHC proton-proton collision data.28579919 · Aaboud, M, Aad, G, Abbott, B et al.2022 · 260 citationsThe European physical journal. C, Particles and fields. 2017;77(3):195
Measurements of top-quark pair differential cross-sections in the [Formula: see text] channel in pp collisions at [Formula: see text] TeV using the ATLAS detector.28579920 · Aaboud, M, Aad, G, Abbott, B et al.2024 · 37 citationsThe European physical journal. C, Particles and fields. 2017;77(5):292
Search for new phenomena in events containing a same-flavour opposite-sign dilepton pair, jets, and large missing transverse momentum in [Formula: see text] [Formula: see text][Formula: see text] collisions with the ATLAS detector.28690423 · Aaboud, M, Aad, G, Abbott, B et al.2024 · 19 citationsThe European physical journal. C, Particles and fields. 2017;77(3):144
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