YK
Yuval Kluger
cs.LGstat.MLbioinformaticshep-phimmunologyAlgorithmsMelanomaHIV Infectionsmath.STstat.TH
On Valency
published · living versionsW_a2h87auj·v1 · currentpublished
Blind Noise Equalization for Large Data Matrices under General Variance Profiles
with Boris Landa, Francesco Strino, Fabio Parisi, Ruiqi Li
1 version
Preprints & journals
233 papers in the corpus · 1984–2026Taurine lowers inflammaging by regulating the NLRP3 inflammasome in macrophages.42914977 · Guan, Chenyang, Ryu, Seungjin, Dong, Mingze et al.2026 · 0 citationsCell. 2026
The dark transcriptome mouse organogenesis cell atlas.42926645 · Liu, Miao, Zhang, Dingyao, Li, Keyi et al.2026 · 2 citationsbioRxiv : the preprint server for biology. 2026
Cysteine reduction rather than methionine restriction promotes immunometabolic fitness to confer survival benefit in aging.42818259 · Orliaguet, Lucie, Kim, Hee-Hoon, Gupta, Piyush et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis.42802277 · Baker, Megan L, Kakade, Vijayakumar R, Budiman, Tifanny et al.2026 · 0 citationsNature communications. 2026;17(1)
Density-Reweighted Entropic Optimal Transport: Decoupling Geometry from Sampling Density2608.16506v1 · Keyi Li, Yuval Kluger, Boris Landa2026 · 0 citationsarXiv
A spatial multi-omics atlas of immunosenescence reveals germinal-center B cell dysfunction in human lymph nodes.42519544 · Farzad, Negin, Enninful, Archibald, Lu, Yao et al.2026 · 2 citationsCell press blue. 2026;1(4)
Locat: Joint enrichment and depletion testing identifies localized marker genes in single-cell transcriptomics.41993378 · Lewis, Wesley, Aizenbud, Yariv, Strino, Francesco et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Human Lymph Node Cellular Senescence Atlas Reveals Age-Dependent Alteration in Germinal Center B Cell Function and Niches.41993351 · Farzad, Negin, Enninful, Archibald, Lu, Yao et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2026
Sharp cell type boundaries emerge from coordinated morphogen signaling.41959217 · Li, Ruiqi, Jiang, Yiqun, Platt, Sarah et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
MOSAIC: A Spectral Framework for Integrative Phenotypic Characterization Using Population-Level Single-Cell Multi-Omics.41727122 · Lu, Chang, Kluger, Yuval, Ma, Rong2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Immunometabolic resistors of aging in long-lived golden spiny mice.41739938 · Kim, Hee-Hoon, Sagiv-Zangi, Tali, Youm, Yun-Hee et al.2026 · 1 citationScience advances. 2026;12(9):eaec9991
RuleSmith: Multi-Agent LLMs for Automated Game Balancing2602.06232v2 · Ziyao Zeng, Hao Wang, Chen Liu et al.2026 · 0 citationsarXiv
Stack: In-Context Learning of Single-Cell Biology.41542582 · Dong, Mingze, Adduri, Abhinav, Gautam, Dhruv et al.2026 · 12 citationsbioRxiv : the preprint server for biology. 2026
DiCoLo: Integration-free and cluster-free detection of localized differential gene co-expression in single-cell data.41404607 · Li, Ruiqi, Yang, Junchen, Su, Pei-Chun et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Spatial analysis reveals the cellular microenvironments and mechanisms of inflammation and kidney injury in acute interstitial nephritis.41278888 · Baker, Megan L, Kakade, Vijayakumar R, Budiman, Tifanny et al.2026 · 3 citationsbioRxiv : the preprint server for biology. 2025
CTLA-4 blockade shifts the B cell repertoire toward autoimmunity.41026527 · Çakan, Elif, Wang, Meng, Dai, Yile et al.2025 · 9 citationsThe Journal of clinical investigation. 2025;135(22)
Understanding and Enhancing Mask-Based Pretraining towards Universal Representations2509.21650v1 · Mingze Dong, Leda Wang, Yuval Kluger2025 · 0 citationsarXiv
Humanization of CD47 enables development of functional human neutrophils via postirradiation remodeling of the bone marrow.40956886 · Sefik, Esen, Philbrick, William, Zhang, Fengrui et al.2025 · 3 citationsProceedings of the National Academy of Sciences of the United States of America. 2025;122(38):e2426546122
Injecting Measurement Information Yields a Fast and Noise-Robust Diffusion-Based Inverse Problem Solver2508.02964v3 · Jonathan Patsenker, Henry Li, Myeongseob Ko et al.2025 · 0 citationsarXiv
Euclidean Distance Deflation Under High-Dimensional Heteroskedastic Noise2507.18520v2 · Keyi Li, Yuval Kluger, Boris Landa2025 · 1 citationarXiv
Humoral determinants of checkpoint immunotherapy.40702172 · Dai, Yile, Aizenbud, Lilach, Qin, Kai et al.2025 · 28 citationsNature. 2025;644(8076):527-536
Interaction of Wnt and SHH gradients synchronizes cell cycle exit and differentiation.40631112 · Li, Ruiqi, Jiang, Yiqun, Platt, Sarah et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2025
The tumor microenvironment of non-small cell lung cancer impairs immune cell function in people with HIV.40459946 · Desai, Shruti S, Salahuddin, Syim, Yusuf, Ramsey et al.2025 · 9 citationsThe Journal of clinical investigation. 2025;135(14)
Medications for opioid use disorder shape immune responses during chronic HIV infection.40460829 · Collora, Jack A, Steinhauser, Savannah F, Davenport, Timothy C et al.2025 · 0 citationsCell reports. Medicine. 2025;6(6):102159
Hormetic elevation of taurine restrains inflammaging by deactivating the NLRP3 inflammasome.40501605 · Guan, Chenyang, Ryu, Seungjin, Dong, Mingze et al.2025 · 3 citationsbioRxiv : the preprint server for biology. 2025
SORBET: Automated cell-neighborhood analysis of spatial transcriptomics or proteomics for interpretable sample classification via GNN.38260586 · Shimonov, Shay, Cunningham, Joseph M, Talmon, Ronen et al.2026 · 6 citationsbioRxiv : the preprint server for biology. 2025
SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data.40148341 · Dong, Mingze, Su, David G, Kluger, Harriet et al.2025 · 18 citationsNature communications. 2025;16(1):2990
AMULETY: A Python package to embed adaptive immune receptor sequences.40196678 · Wang, Meng, Kluger, Yuval, Kleinstein, Steven H et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2025
Multi-omic Characterization of HIV Effects at Single Cell Level across Human Brain Regions.39975288 · Yang, Junchen, Agrawal, Kriti, Stanley, Jay et al.2025 · 9 citationsbioRxiv : the preprint server for biology. 2025
Principled PCA separates signal from noise in omics count data.39975320 · Stanley, Jay S, Yang, Junchen, Li, Ruiqi et al.2026 · 3 citationsbioRxiv : the preprint server for biology. 2025
The Dyson equalizer: adaptive noise stabilization for low-rank signal detection and recovery.39830802 · Landa, Boris, Kluger, Yuval2026 · 2 citationsInformation and inference : a journal of the IMA. 2025;14(1):iaae036
Likelihood Training of Cascaded Diffusion Models via Hierarchical Volume-preserving Maps2501.06999v1 · Henry Li, Ronen Basri, Yuval Kluger2025 · 0 citationsarXiv
Dual Diffusion for Unified Image Generation and Understanding2501.00289v2 · Zijie Li, Henry Li, Yichun Shi et al.2024 · 12 citationsarXiv
Scaling deep identifiable models enables zero-shot characterization of single-cell biological states.38014345 · Dong, Mingze, Agrawal, Kriti, Fan, Rong et al.2026 · 3 citationsbioRxiv : the preprint server for biology. 2024
LMD: Cluster-Independent Multiscale Marker Identification in Single-cell RNA-seq Data.38014159 · Li, Ruiqi, Qu, Rihao, Parisi, Fabio et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2024
Nerve-associated macrophages control adipose homeostasis across lifespan and restrain age-related inflammation.39416197 · Gonzalez-Hurtado, Elsie, Leveau, Claire, Li, Keyi et al.2025 · 19 citationsbioRxiv : the preprint server for biology. 2024
SIMVI reveals intrinsic and spatial-induced states in spatial omics data.37693629 · Dong, Mingze, Su, David, Kluger, Harriet et al.2025 · 4 citationsbioRxiv : the preprint server for biology. 2024
Entropic Optimal Transport Eigenmaps for Nonlinear Alignment and Joint Embedding of High-Dimensional Datasets2407.01718v2 · Boris Landa, Yuval Kluger, Rong Ma2024 · 0 citationsarXiv
The single-cell opioid responses in the context of HIV (SCORCH) consortium.38879719 · Ament, Seth A, Campbell, Rianne R, Lobo, Mary Kay et al.2024 · 17 citationsMolecular psychiatry. 2024;29(12):3950-3961
IL-4 Licenses B Cell Activation Through Cholesterol Synthesis.38798553 · Steach, Holly R, York, Autumn G, Skadow, Mathias H et al.2026 · 2 citationsbioRxiv : the preprint server for biology. 2024
Supervised fine-tuning of pre-trained antibody language models improves antigen specificity prediction.38798340 · Wang, Meng, Patsenker, Jonathan, Li, Henry et al.2026 · 22 citationsbioRxiv : the preprint server for biology. 2024
HIV-1-infected T cell clones are shared across cerebrospinal fluid and blood during ART.38587074 · Wang, Meng, Yoon, Jennifer, Reisert, Hailey et al.2024 · 21 citationsJCI insight. 2024;9(7)
Gene trajectory inference for single-cell data by optimal transport metrics.38580861 · Qu, Rihao, Cheng, Xiuyuan, Sefik, Esen et al.2025 · 50 citationsNature biotechnology. 2025;43(2):258-268
Three-Dimensional Reconstruction Pre-Training as a Prior to Improve Robustness to Adversarial Attacks and Spurious Correlation.38539769 · Yamada, Yutaro, Zhang, Fred Weiying, Kluger, Yuval et al.2024 · 0 citationsEntropy (Basel, Switzerland). 2024;26(3)
Circulating Tumor Reactive KIR+CD8+ T cells Suppress Anti-Tumor Immunity in Patients with Melanoma.38464315 · Hafler, David, Lu, Benjamin, Lucca, Liliana et al.2026 · 16 citationsResearch square. 2024
IL-10 constrains sphingolipid metabolism to limit inflammation.38383790 · York, Autumn G, Skadow, Mathias H, Oh, Joonseok et al.2024 · 252 citationsNature. 2024;627(8004):628-635
Language model-based B cell receptor sequence embeddings can effectively encode receptor specificity.38109302 · Wang, Meng, Patsenker, Jonathan, Li, Henry et al.2024 · 26 citationsNucleic acids research. 2024;52(2):548-557
A bedside to bench study of anti-PD-1, anti-CD40, and anti-CSF1R indicates that more is not necessarily better.37964379 · Djureinovic, Dijana, Weiss, Sarah A, Krykbaeva, Irina et al.2023 · 16 citationsMolecular cancer. 2023;22(1):182
Maternal CXCR4 deletion results in placental defects and pregnancy loss mediated by immune dysregulation.37815869 · Lyu, Fang, Burzynski, Chase, Fang, Yuan Yuan et al.2023 · 14 citationsJCI insight. 2023;8(21)
Spatial Analysis Reveals Impaired Immune Cell Function within the Tumor Microenvironment of HIV-associated Non-small Cell Lung Cancer10.1101/2023.10.21.23297229v2 · Desai, S., Salahuddin, S., Yusuf, R. et al.2023 · 1 citationmedRxiv
Career total: 410 works. 233 are in this corpus.Showing the 50 most recent.
Profile built from the corpus for this byline.
Author records are still filling in while the Hub is in alpha. If this is your page, you'll be able to claim it soon. Spot a mistake? Tell us.