TN
Thomas E. Nichols
neuroscienceMagnetic Resonance ImagingBrainstat.APNeuroimagingfMRIModels, Neurologicalstat.MEAlgorithmsBrain Mapping
On Valency
published · living versionsW_ursjnzxq·v1 · currentpublished
Deep Auxiliary Learning via Bilevel Feature Optimization for Label-Efficient Medical Image Segmentation
with Fuping Wu, Xi Jia, Le Zhang, Jiahua Li +2
1 version
Preprints & journals
393 papers in the corpus · 1958–2026Deep Auxiliary Learning via Bilevel Feature Optimization for Label-Efficient Medical Image Segmentation2610.26954v1 · Fuping Wu, Xi Jia, Le Zhang et al.2026 · 0 citationsarXivon Valency
Reconciling global collaboration and data sovereignty in neuroscience.42786235 · Ray, Kimberly L, Botes, Marietjie, Collier, Melanie et al.2026 · 2 citationsNature neuroscience. 2026;29(10):2397-2407
Structural brain indicators of cognitive performance in middle and late adulthood: The Human Connectome Project in Aging/Aging Adult Brain Connectome cohort.42784930 · Hong, Yue, Michel, Christa, Gassner, Gabriele Maria et al.2026 · 0 citationsNeurobiology of aging. 2027;169:125-140
Nomograms for Computed Tomography Measured Intracranial Volume in Children and Intracranial Volume Centiles in Craniosynostosis.42720595 · Chetan, Madhurima, Mawere, Akudziwe, Griffanti, Ludovica et al.2026 · 0 citationsThe Journal of craniofacial surgery. 2026
Clarifying and extending permutation tests on brain map correspondence through mixed-effects modeling.42719771 · Wang, Qiaochu, Peng, Lingyi, Nichols, Thomas E et al.2026 · 0 citationsImaging neuroscience (Cambridge, Mass.). 2026;4
Mapping organ fat distribution and body composition: towards precision profiling of cardiometabolic disease risk.42671042 · Kway, Yeshe Manuel, Raisi-Estabragh, Zahra, Vavilis, Georgios et al.2026 · 1 citationEuropean heart journal. 2026
The Adolescent Brain Cognitive Development (ABCD) Study: Ten years of statistical and methodological contributions.42462447 · Dick, Anthony Steven, Hawes, Samuel, Bayat, Mohammadreza et al.2026 · 0 citationsDevelopmental cognitive neuroscience. 2026;81:101779
Excessive Censoring Degrades Individual-Specific Cortical Parcellations and Personalized TMS Targets.42427520 · Tan, Trevor Wei Kiat, Kong, Ru, Xue, Aihuiping et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Task-guided cross-subject latent alignment: a multi-encoder-decoder VAE2606.15989v1 · Angeliki Papathanasiou, Jascha Achterberg, Thomas E. Nichols et al.2026 · 0 citationsarXiv
MIDFA: Scalable Bayesian Factor Analysis for Mixed and Incomplete Data10.64898/2026.06.10.731315v1 · Hutchings, G., Samartsidis, P., Donnay, C. et al.2026 · 0 citationsbioRxiv
Effect sizes in human functional neuroimaging.42281980 · Noble, Stephanie, Shearer, Hallee, Rosenblatt, Matt et al.2026 · 0 citationsResearch square. 2026
Convergent and divergent brain-cognition development in early adolescence.42191703 · Xie, Yapei, Zhang, Shaoshi, Orban, Csaba et al.2026 · 1 citationNature communications. 2026;17(1)
The Hidden Landscape of Missed Effects in Human Functional Neuroimaging.42239359 · Noble, Stephanie, Shearer, Hallee, Rosenblatt, Matthew et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Widespread use of invalid statistical tests in biomedical machine learning.42239408 · Zeng, Tianchu, Li, Hetu, Zhang, Shaoshi et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2026
Bayesian Nonparametrics for Normative Modelling in Multiple Sclerosis via Modularised Inference10.64898/2026.05.10.26352835v1 · Taschler, B., Nichols, T. E., Ganjgahi, H.2026 · 0 citationsmedRxiv
Scalable Bayesian Image-on-Scalar Regression for Population-Scale Neuroimaging Data Analysis.42211830 · Xu, Yuliang, Johnson, Timothy D, Nichols, Thomas E et al.2026 · 0 citationsJournal of the American Statistical Association. 2026
Cognition and future depression: associations with risk in those with and without a history of depression.42091425 · de Cates, Angharad N, Lee, Angeline, Winchester, Laura et al.2026 · 0 citationsBMJ mental health. 2026;29(1)
Association of nociplastic pain with executive function decline in a longitudinal cohort of middle-age adults. Response to on Br J Anaesth 2026; 136: 1663-4.42062154 · Kelleher, Eoin M, Tai, Xin-You, Schrepf, Andrew et al.2026 · 0 citationsBritish journal of anaesthesia. 2026;137(1):342-343
Connectome-based spatial statistics enabling large-scale population analyses of human connectome across cohorts.41993545 · Li, Tengfei, Wang, Xifeng, Cole, Martin et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Brain signatures of nociplastic pain: Fibromyalgia Index and descending modulation at population level.40819274 · Kelleher, Eoin Maurice, Lange, Frederik, Wanigasekera, Vishvarani et al.2026 · 16 citationsBrain : a journal of neurology. 2026;149(4):1365-1380
Excessive data censoring in fMRI undermines individual precision and weakens brain-behavior associations2603.07380v1 · Amanda Mejia, Joanne Hwang, Damon Pham et al.2026 · 1 citationarXiv
Controlling for confounds in UK Biobank brain imaging data with small subsets of subjects10.64898/2026.03.02.26347455v1 · Radosavljevic, L., Smith, S., Nichols, T. E.2026 · 0 citationsmedRxiv
eTFCE: Exact Threshold-Free Cluster Enhancement via Fast Cluster Retrieval2603.03004v3 · Xu Chen, Wouter D. Weeda, Thomas E. Nichols et al.2026 · 0 citationsarXiv
The methodological foundations of lesion network mapping remain sound.42124622 · Siddiqi, Shan, Horn, Andreas, Schaper, Frederic L W V J et al.2026 · 9 citationsbioRxiv : the preprint server for biology. 2026
Normative growth trajectories of fetal brain regions validated by satisfactory maturation of neurodevelopmental domains at 2 years of age.41730874 · Wyburd, Madeleine K, Kennedy, Stephen H, Fernandes, Michelle et al.2026 · 1 citationNature communications. 2026;17(1)
Statistical Opportunities in Neuroimaging2602.12974v1 · Jian Kang, Thomas Nichols, Lexin Li et al.2026 · 0 citationsarXiv
PROspectiVe imaging research DEsign and coNducT (PROVIDENT): Considerations for clinical trials and studies using imaging (Part I).41643277 · Biscombe, K, Porta, N, Conaghan, P G et al.2026 · 1 citationRadiography (London, England : 1995). 2026;32(3):103322
Neurosynth Compose: A web-based platform for flexible and reproducible neuroimaging meta-analysis.41614048 · Kent, James D, Lee, Nicholas, Laird, Angela R et al.2026 · 7 citationsImaging neuroscience (Cambridge, Mass.). 2026;4
Alcohol use and risk of dementia in diverse populations: evidence from cohort, case-control and Mendelian randomisation approaches.40987604 · Topiwala, Anya, Levey, Daniel F, Zhou, Hang et al.2026 · 28 citationsBMJ evidence-based medicine. 2026;31(1):13-22
PROspectiVe imaging research DEsign and coNducT (PROVIDENT): Considerations for clinical trials and studies using imaging (Part II).41570468 · Biscombe, K, Porta, N, Conaghan, P G et al.2026 · 3 citationsRadiography (London, England : 1995). 2026;32(3):103329
PANDORA: Population Archive of Neuroimaging Data Organized for Rapid Analysis10.64898/2026.01.05.26343425v2 · Abivardi, A., Webster, M., McCarthy, P. et al.2026 · 0 citationsmedRxiv
CBMR: Coordinate-based meta-regression for group and covariate inference.41438653 · Yu, Yifan, Hill-Bowen, Lauren D, Riedel, Michael Cody et al.2025 · 0 citationsImaging neuroscience (Cambridge, Mass.). 2025;3
An Improved Pipeline for Constructing UK Biobank Brain Imaging Confounds10.1101/2025.11.21.25340740v1 · Radosavljevic, L., Maullin-Sapey, T., Alfaro-Almagro, F. et al.2025 · 0 citationsmedRxiv
Advancing image-based meta-analysis through systematic use of crowdsourced NeuroVault data.41120434 · Peraza, Julio A, Kent, James D, Blair, Ross W et al.2025 · 3 citationsScientific reports. 2025;15(1):36582
Accounting for Structured Missingness in Canonical Correlation Analysis10.1101/2025.10.09.25337581v1 · Radosavljevic, L., Smith, S. M., Nichols, T. E.2025 · 0 citationsmedRxiv
Age associations with cortical and subcortical brain structure in adolescents age 9-17.41000698 · Smith, Diana M, Rigby, Alison, Pecheva, Diliana et al.2025 · 0 citationsbioRxiv : the preprint server for biology. 2025
Association of nociplastic pain with executive function decline in a longitudinal cohort of middle-age adults: a prospective cohort study.40975688 · Kelleher, Eoin M, Tai, Xin-You, Schrepf, Andrew et al.2026 · 4 citationsBritish journal of anaesthesia. 2025;135(6):1717-1729
The Ups and Downs of Brain Stress: Extending the Triple Network Hypothesis.40850355 · Henze, Gina-Isabelle, Giglberger, Marina, Bärtl, Christoph et al.2026 · 5 citationsBiological psychiatry. Cognitive neuroscience and neuroimaging. 2026;11(9):1141-1156
AI-driven reclassification of multiple sclerosis progression.40835969 · Ganjgahi, Habib, Häring, Dieter A, Aarden, Piet et al.2025 · 44 citationsNature medicine. 2025;31(10):3414-3424
A hierarchical modelling approach for Bayesian Causal Forests on longitudinal data: A Case Study in Multiple Sclerosis Clinical Trials2508.08418v1 · Emma Prevot, Dieter A. Haring, Thomas E. Nichols et al.2025 · 0 citationsarXiv
NiCLIP: Neuroimaging contrastive language-image pretraining model for predicting text from brain activation images.40661603 · Peraza, Julio A, Kent, James D, Nichols, Thomas E et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2025
SPM-30 years and beyond.40928747 · Zeidman, Peter, Ashburner, John, Barnes, Gareth et al.2025 · 13 citationsCerebral cortex (New York, N.Y. : 1991). 2025;35(8)
Brain Perfusion Imaging of a Large Population: Arterial Spin Labelling MRI in UK Biobank10.1101/2025.07.23.25332042v2 · Okell, T. W., Xu, X., Craig, M. et al.2025 · 1 citationmedRxiv
Challenges and opportunities for advancing functional MRI in clinical practice.39965101 · Voets, Natalie L, Price, Cathy J, Glasser, Matthew F et al.2026 · 1 citationBrain : a journal of neurology. 2025;148(7):2242-2246
Structural Brain Correlates of Childhood Inhibited Temperament: An ENIGMA-Anxiety Mega-Analysis.40619094 · Bas-Hoogendam, Janna Marie, Bernstein, Rachel A, Benson, Brenda E et al.2026 · 0 citationsJournal of the American Academy of Child and Adolescent Psychiatry. 2026;65(4):577-604
Convergent and Divergent Brain-Cognition Development.40502168 · Xie, Yapei, Zhang, Shaoshi, Orban, Csaba et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2025
Characterising ongoing brain aging and baseline effects from cross-sectional data.40800900 · Smith, Stephen M, Miller, Karla L, Nichols, Thomas E2025 · 14 citationsImaging neuroscience (Cambridge, Mass.). 2025;3
BARTharm: MRI Harmonization Using Image Quality Metrics and Bayesian Non-parametric10.1101/2025.06.04.657792v1 · Prevot, E., Haering, D. A., Gaetano, L. et al.2025 · 1 citationbioRxiv
The effect of D-cycloserine on brain connectivity over a course of pulmonary rehabilitation - A randomised control trial with neuroimaging endpoints.40455920 · Finnegan, Sarah L, Harrison, Olivia K, Ezra, Martyn et al.2025 · 0 citationsPloS one. 2025;20(6):e0323213
FEMA-Long: Modeling unstructured covariances for discovery of time-dependent effects in large-scale longitudinal datasets.40463188 · Parekh, Pravesh, Parker, Nadine, Pecheva, Diliana et al.2026 · 3 citationsbioRxiv : the preprint server for biology. 2025
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