UF
Ulisse Ferrari
neurosciencecond-mat.dis-nnq-bio.NCcond-mat.stat-mechModels, Neurologicalbioinformaticscs.LGRetinacs.CVHigh-Throughput Nucleotide Sequencing
On Valency
published · living versionsW_qkmrwzrt·v1 · currentpublished
Preprints & journals
76 papers in the corpus · 2010–2026Biologically grounded locality priors close the data gap for vision transformers in neural prediction10.64898/2026.09.03.749141v1 · Farina, M., zamberlan, p., Onken, A. et al.2026 · 0 citationsbioRxiv
Viability of engineered AAVs via protein language models10.64898/2026.06.11.731521v1 · Desrosiers, M., Ocari, T., Trinquier, J. et al.2026 · 0 citationsbioRxiv
Promfusion: a synthetic fusion promoter enabling enhanced and balanced photoreceptor transgene expression10.64898/2026.06.05.730342v1 · Tran, S., Trinquier, J., Van Meter, T. et al.2026 · 0 citationsbioRxiv
A multi-scale information geometry reveals the structure of mutual information in neural populations2605.06304v1 · Simone Azeglio, Steeve Laquitaine, Ulisse Ferrari et al.2026 · 0 citationsarXiv
Functional coupling networks inferred from prefrontal cortex activity show experience-related effective plasticity.29855621 · Tavoni, Gaia, Ferrari, Ulisse, Battaglia, Francesco P et al.2026 · 43 citationsNetwork neuroscience (Cambridge, Mass.). 2017;1(3):275-301
VIP+ amacrine cells synchronize neural activity in the retina10.64898/2026.02.06.704482v1 · Varro, D., Virgili, S., Ebert, S. et al.2026 · 0 citationsbioRxiv
Stimulus sensitivity in noisy neural systems10.64898/2025.12.24.696343v1 · Paris, C., Laquitaine, S., Chalk, M. et al.2025 · 0 citationsbioRxiv
Balanced spatiotemporal color responses are fine-tuned to natural light spectrum in mice ventral retina.41386207 · Quétu, Tom, Louboutin, Awen, Castellani, Filippo et al.2025 · 0 citationsVision research. 2025;240:108743
Convolution goes higher-order: a biologically inspired mechanism empowers image classification2412.06740v2 · Simone Azeglio, Olivier Marre, Peter Neri et al.2024 · 0 citationsarXiv
Balanced spatiotemporal color responses are fine-tuned to natural light spectrum in mice ventral retina10.1101/2025.03.13.643035v2 · Quetu, T., Louboutin, A., Castellani, F. et al.2025 · 0 citationsbioRxiv
Decomposing stimulus-specific sensory neural information via diffusion models2505.11309v2 · Steeve Laquitaine, Simone Azeglio, Carlo Paris et al.2025 · 0 citationsarXiv
Diagrammatic expansion for the mutual-information rate in the realm of limited statistics2504.06255v3 · Tobias Kuhn, Gabriel Mahuas, Ulisse Ferrari2025 · 1 citationarXiv
Optimal sequencing depth for measuring the concentrations of molecular barcodes.40867047 · Ocari, Tommaso, Zin, Emilia A, Tekinsoy, Muge et al.2025 · 1 citationNucleic acids research. 2025;53(16)
Direction-selective retinal ganglion cells encode motion direction uniformly, despite having discretely distributed cardinal preferences10.1101/2025.07.23.666360v1 · Paris, C., Hubert, F., Franke, F. et al.2025 · 1 citationbioRxiv
Strong, but not weak, noise correlations are beneficial for population coding2406.18439v3 · Gabriel Mahuas, Thomas Buffet, Olivier Marre et al.2024 · 4 citationsarXiv
Higher-Order Convolution Improves Neural Predictivity in the Retina2505.07620v1 · Simone Azeglio, Victor Calbiague Garcia, Guilhem Glaziou et al.2025 · 0 citationsarXiv
Optimal sequencing depth for measuring the concentrations of molecular barcodes10.1101/2024.06.02.596943v2 · Ocari, T., Zin, E. A., Tekinsoy, M. et al.2024 · 1 citationbioRxiv
Impact of DNase digestion on titer measurements of engineered adeno-associated virus serotypes.40160975 · Zin, Emilia A, Desrosiers, Melissa, Ocari, Tommaso et al.2025 · 4 citationsMolecular therapy. Methods & clinical development. 2025;33(2):101419
The Role of Thermal Stability in AAV Titration of Engineered Variants10.1101/2024.09.11.612416v1 · Zin, E. A., Desrosiers, M., Ocari, T. et al.2024 · 0 citationsbioRxiv
Strong, but not weak, noise correlations are beneficial for population coding10.1101/2024.06.26.600826v1 · Mahuas, G., Buffet, T., Marre, O. et al.2024 · 4 citationsbioRxiv
ACIDES: on-line monitoring of forward genetic screens for protein engineering.38148337 · Nemoto, Takahiro, Ocari, Tommaso, Planul, Arthur et al.2023 · 7 citationsNature communications. 2023;14(1):8504
All-optical inter-layers functional connectivity investigation in the mouse retina.36046629 · Spampinato, Giulia Lia Beatrice, Ronzitti, Emiliano, Zampini, Valeria et al.2023 · 16 citationsCell reports methods. 2022;2(8):100268
Small-correlation expansion to quantify information in noisy sensory systems.37723816 · Mahuas, Gabriel, Marre, Olivier, Mora, Thierry et al.2023 · 0 citationsPhysical review. E. 2023;108(2-1):024406
Uncursing winner's curse: on-line monitoring of directed evolution convergence10.1101/2023.01.03.522172v2 · Nemoto, T., Ocari, T., Planul, A. et al.2023 · 2 citationsbioRxiv
A small-correlation expansion to quantify information in noisy sensory systems10.1101/2022.11.30.518520v1 · Mahuas, G., Marre, O., Mora, T. et al.2022 · 1 citationbioRxiv
A small-correlation expansion to quantify information in noisy sensory systems2211.13712v1 · Gabriel Mahuas, Olivier Marre, Thierry Mora et al.2022 · 1 citationarXiv
Context-dependent selectivity to natural images in the retina.36138007 · Goldin, Matías A, Lefebvre, Baptiste, Virgili, Samuele et al.2022 · 40 citationsNature communications. 2022;13(1):5556
Time-dependent maximum entropy model for populations of retinal ganglion cells2207.12810v1 · Geoffroy Delamare, Ulisse Ferrari2022 · 5 citationsarXiv
Time-dependent maximum entropy model for populations of retinal ganglion cells10.1101/2022.07.13.498395v1 · Delamare, G., Ferrari, U.2022 · 5 citationsbioRxiv
Planar polarity in primate cone photoreceptors: a potential role in Stiles Crawford effect phototropism.35075261 · Verschueren, Anna, Boucherit, Leyna, Ferrari, Ulisse et al.2022 · 24 citationsCommunications biology. 2022;5(1):89
Functional ultrasound imaging of the spreading activity following optogenetic stimulation of the rat visual cortex.34131223 · Provansal, M, Labernède, G, Joffrois, C et al.2021 · 22 citationsScientific reports. 2021;11(1):12603
Context-dependent selectivity to natural scenes in the retina10.1101/2021.10.01.462157v1 · Goldin, M. A., Lefebvre, B., Virgili, S. et al.2021 · 4 citationsbioRxiv
Predicting synchronous firing of large neural populations from sequential recordings.33507938 · Sorochynskyi, Oleksandr, Deny, Stéphane, Marre, Olivier et al.2021 · 12 citationsPLoS computational biology. 2021;17(1):e1008501
Functional ultrasound imaging of the spreading activity following optogenetic stimulation of the rat visual cortex10.1101/2021.02.05.429985v2 · Provansal, M., Labernede, G., Joffrois, C. et al.2021 · 22 citationsbioRxiv
A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons2006.06497v3 · Gabriel Mahuas, Giulio Isacchini, Olivier Marre et al.2020 · 12 citationsarXiv
A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons10.1101/2020.06.11.145904v3 · Mahuas, G., Isacchini, G., Marre, O. et al.2020 · 12 citationsbioRxiv
Functional ultrasound imaging of deep visual cortex in awake nonhuman primates.32513717 · Blaize, Kévin, Arcizet, Fabrice, Gesnik, Marc et al.2020 · 83 citationsProceedings of the National Academy of Sciences of the United States of America. 2020;117(25):14453-14463
Towards optogenetic vision restoration with high resolution.32667921 · Ferrari, Ulisse, Deny, Stéphane, Sengupta, Abhishek et al.2020 · 44 citationsPLoS computational biology. 2020;16(7):e1007857
A Simple Model for Low Variability in Neural Spike Trains.30148708 · Ferrari, Ulisse, Deny, Stéphane, Marre, Olivier et al.2020 · 15 citationsNeural computation. 2018;30(11):3009-3036
Cholinergic switch between two types of slow waves in cerebral cortex1810.00816v3 · Trang-Anh E. Nghiem, N'uria Tort-Colet, Tomasz G'orski et al.2018 · 47 citationsCerebral Cortex 2019
Predicting synchronous firing of large neural populations from sequential recordings10.1101/560656v3 · Sorochynskyi, O., Deny, S., Marre, O. et al.2019 · 12 citationsbioRxiv
Predicting synchronous firing of large neural populations from sequential recordings1904.04544v1 · Oleksandr Sorochynskyi, St'ephane Deny, Olivier Marre et al.2019 · 12 citationsarXiv
Functional ultrasound imaging of deep visual cortex in awake non-human primates10.1101/551663v2 · Blaize, K., Gesnik, M., Arcizet, F. et al.2019 · 4 citationsbioRxiv
All-optical interrogation of a direction selective retinal circuit by holographic wave front shaping10.1101/513192v1 · Spampinato, G. L. B., Ronzitti, E., Zampini, V. et al.2019 · 8 citationsbioRxiv
Optogenetic vision restoration with high resolution1811.06866v1 · Ulisse Ferrari, St'ephane Deny, Abhishek Sengupta et al.2018 · 5 citationsarXiv
Optogenetic vision restoration with high resolution10.1101/470773v1 · Ferrari, U., Deny, S., Sengupta, A. et al.2018 · 5 citationsbioRxiv
Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons1801.01823v2 · Ulisse Ferrari, Stephane Deny, Matthew Chalk et al.2018 · 27 citationsPhys. Rev. E 98, 042410 (2018)
Multiplexed computations in retinal ganglion cells of a single type.29213097 · Deny, Stéphane, Ferrari, Ulisse, Macé, Emilie et al.2018 · 78 citationsNature communications. 2017;8(1):1964
Maximum entropy models reveal the excitatory and inhibitory correlation structures in cortical neuronal activity1801.01853v3 · Trang-Anh Nghiem, Bartosz Telenczuk, Olivier Marre et al.2018 · 46 citationsPhys. Rev. E 98, 012402 (2018)
Closed-loop estimation of retinal network sensitivity reveals signature of efficient coding1612.07712v2 · Ulisse Ferrari, Christophe Gardella, Olivier Marre et al.2016 · 8 citationseNeuro 4 (6) ENEURO.0166-17.2017 (2018)
Career total: 75 works. 76 are in this corpus.Showing the 50 most recent.
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