JB
Joshua Batson
cs.LGSARS-CoV-2COVID-19epidemiologycs.CVcs.AIcs.CLgenomicsmath.GTmicrobiology
On Valency
published · living versionsW_5uruupn8·v1 · currentpublished
Auditing language models for hidden objectives
with Samuel Marks, Johannes Treutlein, Trenton Bricken, Jack Lindsey +30
1 version
Preprints & journals
32 papers in the corpus · 2007–2026Emotion Concepts and their Function in a Large Language Model2604.07729v1 · Nicholas Sofroniew, Isaac Kauvar, William Saunders et al.2026 · 4 citationsarXiv
When Models Manipulate Manifolds: The Geometry of a Counting Task2601.04480v1 · Wes Gurnee, Emmanuel Ameisen, Isaac Kauvar et al.2026 · 0 citationsarXiv
Auditing language models for hidden objectives2503.10965v2 · Samuel Marks, Johannes Treutlein, Trenton Bricken et al.2025 · 4 citationsarXivon Valency
Open Problems in Mechanistic Interpretability2501.16496v1 · Lee Sharkey, Bilal Chughtai, Joshua Batson et al.2025 · 11 citationsarXiv
Twice-Ramanujan Sparsifiers0808.0163v3 · Joshua Batson, Daniel A. Spielman, Nikhil Srivastava2008 · 6 citationsarXiv
Accumulated metagenomic studies reveal recent migration, whole genome evolution, and undiscovered diversity of orthomyxoviruses.37830816 · Dudas, Gytis, Batson, Joshua2024 · 10 citationsJournal of virology. 2023;97(10):e0105623
Scaling Laws in Jet Classification2312.02264v1 · Joshua Batson, Yonatan Kahn2023 · 4 citationsarXiv
Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh.32527780 · Saha, Senjuti, Malaker, Roly, Sajib, Mohammad Saiful Islam et al.2023 · 39 citationsMicrobiology resource announcements. 2020;9(24)
Accumulated metagenomic studies reveal recent migration, whole genome evolution, and undiscovered diversity of orthomyxoviruses10.1101/2022.08.31.505987v4 · Dudas, G., Batson, J.2022 · 10 citationsbioRxiv
Denoising of diffusion MRI in the cervical spinal cord - effects of denoising strategy and acquisition on intra-cord contrast, signal modeling, and feature conspicuity.36543265 · Schilling, Kurt G, Fadnavis, Shreyas, Batson, Joshua et al.2023 · 26 citationsNeuroImage. 2023;266:119826
Patch2Self denoising of Diffusion MRI with Self-Supervision and Matrix Sketching10.1101/2022.03.15.484539v1 · Fadnavis, S., Chowdhury, A., Batson, J. et al.2022 · 7 citationsbioRxiv
Genomic Epidemiology and Transmission Dynamics of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Congregate Healthcare Facilities in Santa Clara County, California.34328176 · MacCannell, Tara, Batson, Joshua, Bonin, Brandon et al.2022 · 12 citationsClinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2022;74(5):829-835
Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California.35255849 · Stoddard, Gunnar, Black, Allison, Ayscue, Patrick et al.2022 · 19 citationsBMC public health. 2022;22(1):456
Patch2Self denoising of diffusion MRI in the cervical spinal cord improves intra-cord contrast, signal modelling, repeatability, and feature conspicuity10.1101/2021.10.04.21264389v2 · Schilling, K., Fadnavis, S., Batson, J. et al.2021 · 11 citationsmedRxiv
Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay.33904402 · Batson, Joshua, Dudas, Gytis, Haas-Stapleton, Eric et al.2021 · 170 citationseLife. 2021;10
Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California.10.1101/2021.09.21.21258385v1 · Stoddard, G., Black, A., Ayscue, P. et al.2021 · 19 citationsmedRxiv
Community Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Disproportionately Affects the Latinx Population During Shelter-in-Place in San Francisco.32821935 · Chamie, Gabriel, Marquez, Carina, Crawford, Emily et al.2021 · 104 citationsClinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2021;73(Suppl 2):S127-S135
Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California.33893501 · Villarino, Elsa, Deng, Xianding, Kemper, Carol A et al.2021 · 2 citationsThe Journal of infectious diseases. 2021;224(2):207-217
Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR.33067272 · Vanaerschot, Manu, Mann, Sabrina A, Webber, James T et al.2020 · 91 citationsJournal of clinical microbiology. 2020;59(1)
Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay10.1101/2020.02.10.942854v2 · Batson, J., Kistler, A., Dudas, G. et al.2020 · 170 citationsbioRxiv
Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.33112933 · Crawford, Emily D, Acosta, Irene, Ahyong, Vida et al.2020 · 20 citationsPLoS pathogens. 2020;16(10):e1008966
Patch2Self: Denoising Diffusion MRI with Self-Supervised Learning2011.01355v1 · Shreyas Fadnavis, Joshua Batson, Eleftherios Garyfallidis2020 · 40 citationsThirty-fourth Conference on Neural Information Processing Systems, 2020
Identification of a polymorphism in the N gene of SARS-CoV-2 that adversely impacts detection by a widely-used RT-PCR assay10.1101/2020.08.25.265074v1 · Vanaerschot, M., Mann, S. A., Webber, J. T. et al.2020 · 13 citationsbioRxiv
SARS-CoV-2 Community Transmission During Shelter-in-Place in San Francisco10.1101/2020.06.15.20132233v1 · Chamie, G., Marquez, C., Crawford, E. et al.2020 · 23 citationsmedRxiv
Image Deconvolution via Noise-Tolerant Self-Supervised Inversion2006.06156v1 · Hirofumi Kobayashi, Ahmet Can Solak, Joshua Batson et al.2020 · 12 citationsarXiv
FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences.31114866 · Quan, Jenai, Langelier, Charles, Kuchta, Alison et al.2019 · 280 citationsNucleic acids research. 2019;47(14):e83
Molecular Cross-Validation for Single-Cell RNA-seq10.1101/786269v1 · Batson, J., Royer, L. A., Webber, J. T.2019 · 31 citationsbioRxiv
Noise2Self: Blind Denoising by Self-Supervision1901.11365v2 · Joshua Batson, Loic Royer2019 · 117 citationsarXiv
FLASH: A next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences10.1101/426338v2 · Quan, J., Langelier, C., Kuchta, A. et al.2018 · 280 citationsbioRxiv
A Link Splitting Spectral Sequence in Khovanov Homology1303.6240v1 · Joshua Batson, Cotton Seed2013 · 60 citationsDuke Math. J. 164, no. 5 (2015), 801-841
Nonorientable four-ball genus can be arbitrarily large1204.1985v1 · Joshua Batson2012 · 8 citationsarXiv
Nathanson heights in finite vector spaces0710.4605v1 · Joshua D. Batson2007 · 3 citationsarXiv
Career total: 62 works. 32 are in this corpus.
Profile built from the corpus for this byline.
Author records are still filling in while the Hub is in alpha. If this is your page, you'll be able to claim it soon. Spot a mistake? Tell us.