WC
Wen-Chi Chou
Artificial IntelligencebioinformaticsGenome-Wide Association StudyNatural Language ProcessingPolymorphism, Single NucleotideSoftwareTranscription, GeneticVocabulary, ControlledagingANALYSIS/QUANTITATION OF BONE
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
30 papers in the corpus · 2006–2025Discovery of BMS-986408, a First-In-Class Dual DGKα and DGKζ Inhibitor that Unleashes PD-1 Checkpoint and CAR T-cell Immunotherapies.40506249 · Wichroski, Michael, Liu, Si-Qi, Zasadil, Lauren M et al.2025 · 10 citationsCancer immunology research. 2025;13(9):1342-1362
Gut-bladder axis syndrome associated with recurrent UTIs in humans10.1101/2021.11.15.21266268v1 · Worby, C. J., Schreiber, H. L., Straub, T. J. et al.2021 · 4 citationsmedRxiv
Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections.33596852 · Straub, Timothy J, Chou, Wen-Chi, Manson, Abigail L et al.2021 · 31 citationsBMC microbiology. 2021;21(1):53
Analysis of next- and third-generation RNA-Seq data reveals the structures of alternative transcription units in bacterial genomes10.1101/2021.01.02.425006v2 · Wang, Q., Liu, Z., Yan, B. et al.2021 · 0 citationsbioRxiv
Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice.32152589 · Donaldson, Gregory P, Chou, Wen-Chi, Manson, Abigail L et al.2020 · 95 citationsNature microbiology. 2020;5(5):746-756
rSeqTU-A Machine-Learning Based R Package for Prediction of Bacterial Transcription Units.31156694 · Niu, Sheng-Yong, Liu, Binqiang, Ma, Qin et al.2020 · 7 citationsFrontiers in genetics. 2019;10:374
Disentangling the genetics of lean mass.30721968 · Karasik, David, Zillikens, M Carola, Hsu, Yi-Hsiang et al.2019 · 48 citationsThe American journal of clinical nutrition. 2019;109(2):276-287
Gut microbiota utilize immunoglobulin A for mucosal colonization.29724905 · Donaldson, G P, Ladinsky, M S, Yu, K B et al.2018 · 644 citationsScience (New York, N.Y.). 2018;360(6390):795-800
Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.28724990 · Zillikens, M Carola, Demissie, Serkalem, Hsu, Yi-Hsiang et al.2018 · 185 citationsNature communications. 2017;8(1):80
Bacterial virulence phenotypes of Escherichia coli and host susceptibility determine risk for urinary tract infections.28330863 · Schreiber, Henry L, Conover, Matt S, Chou, Wen-Chi et al.2017 · 153 citationsScience translational medicine. 2017;9(382)
SeqTU: A Web Server for Identification of Bacterial Transcription Units.28266571 · Chen, Xin, Chou, Wen-Chi, Ma, Qin et al.2018 · 12 citationsScientific reports. 2017;7:43925
A combined reference panel from the 1000 Genomes and UK10K projects improved rare variant imputation in European and Chinese samples.28004816 · Chou, Wen-Chi, Zheng, Hou-Feng, Cheng, Chia-Ho et al.2018 · 44 citationsScientific reports. 2016;6:39313
Targeted sequencing of genome wide significant loci associated with bone mineral density (BMD) reveals significant novel and rare variants: the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) targeted sequencing study.27616567 · Hsu, Yi-Hsiang, Li, Guo, Liu, Ching-Ti et al.2017 · 8 citationsHuman molecular genetics. 2016;25(23):5234-5243
Novel Genetic Variants Associated With Increased Vertebral Volumetric BMD, Reduced Vertebral Fracture Risk, and Increased Expression of SLC1A3 and EPHB2.27476799 · Nielson, Carrie M, Liu, Ching-Ti, Smith, Albert V et al.2017 · 46 citationsJournal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research. 2016;31(12):2085-2097
GWAS analysis of handgrip and lower body strength in older adults in the CHARGE consortium.27325353 · Matteini, Amy M, Tanaka, Toshiko, Karasik, David et al.2017 · 64 citationsAging cell. 2016;15(5):792-800
Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.26367794 · Zheng, Hou-Feng, Forgetta, Vincenzo, Hsu, Yi-Hsiang et al.2015 · 601 citationsNature. 2015;526(7571):112-7
Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum.25765651 · Chou, Wen-Chi, Ma, Qin, Yang, Shihui et al.2015 · 19 citationsNucleic acids research. 2015;43(10):e67
Comprehensive characterization of the genomic alterations in human gastric cancer.25422082 · Cui, Juan, Yin, Yanbin, Ma, Qin et al.2015 · 77 citationsInternational journal of cancer. 2015;137(1):86-95
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.).23289674 · Zhang, Ji-Yi, Lee, Yi-Ching, Torres-Jerez, Ivone et al.2013 · 68 citationsThe Plant journal : for cell and molecular biology. 2013;74(1):160-73
Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma.22634754 · Sung, Wing-Kin, Zheng, Hancheng, Li, Shuyu et al.2012 · 992 citationsNature genetics. 2012;44(7):765-9
Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis).23166587 · Shaw, Timothy I, Srivastava, Anuj, Chou, Wen-Chi et al.2013 · 79 citationsPloS one. 2012;7(11):e48472
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725.21227922 · Dam, Phuongan, Kataeva, Irina, Yang, Sung-Jae et al.2011 · 101 citationsNucleic acids research. 2011;39(8):3240-54
An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer.20965966 · Cui, Juan, Chen, Yunbo, Chou, Wen-Chi et al.2011 · 199 citationsNucleic acids research. 2011;39(4):1197-207
GolgiP: prediction of Golgi-resident proteins in plants.20733061 · Chou, Wen-Chi, Yin, Yanbin, Xu, Ying2011 · 16 citationsBioinformatics (Oxford, England). 2010;26(19):2464-5
Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725.19346307 · Kataeva, Irina A, Yang, Sung-Jae, Dam, Phuongan et al.2009 · 84 citationsJournal of bacteriology. 2009;191(11):3760-1
SNPs of GSTM1, T1, P1, epoxide hydrolase and DNA repair enzyme XRCC1 and risk of urinary transitional cell carcinoma in southwestern Taiwan.18199464 · Hsu, Ling-I, Chiu, Allen W, Huan, Steven K et al.2008 · 34 citationsToxicology and applied pharmacology. 2008;228(2):144-55
BIOSMILE: a semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features.17764570 · Tsai, Richard Tzong-Han, Chou, Wen-Chi, Su, Ying-Shan et al.2007 · 60 citationsBMC bioinformatics. 2007;8:325
Various criteria in the evaluation of biomedical named entity recognition.16504116 · Tsai, Richard Tzong-Han, Wu, Shih-Hung, Chou, Wen-Chi et al.2006 · 128 citationsBMC bioinformatics. 2006;7:92
Career total: 46 works. 30 are in this corpus.
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