SZ
Shiguo Zhou
Genome, BacterialGenomicsGenome, FungalGenome, PlantSequence Analysis, DNAGenomeAlgorithmsBiological EvolutionGenetic VariationGenome, Protozoan
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
58 papers in the corpus · 2001–2025Ubiquitin Specific Peptidase 51 Exacerbates Skeletal Muscle Injury by Enhancing APAF1-Mediated Apoptosis and Pyroptosis.41273238 · Chen, Yu, Xu, Jie, Ma, Yue et al.2025 · 0 citationsFASEB journal : official publication of the Federation of American Societies for Experimental Biology. 2025;39(22):e71242
The effect of carbon nanoparticles vs. immune colloidal gold technique test strips on parathyroid protection in total thyroidectomy: A randomized clinical trial study.38429055 · Wang, Bochun, Zhu, Yiyuan, Zhou, Shiguo et al.2024 · 5 citationsHead & neck. 2024;46(7):1727-1736
Targeted Phasing of 2-200 Kilobase DNA Fragments with a Short-Read Sequencer and a Single-Tube Linked-Read Library Method.36945366 · Mikhaylova, Veronika, Rzepka, Madison, Kawamura, Tetsuya et al.2024 · 1 citationbioRxiv : the preprint server for biology. 2023
Early effect of standalone oblique lateral interbody fusion vs. combined with lateral screw fixation of the vertebral body on single-level lumbar degenerative disc disease: A pilot study.36565101 · Qiu, Mei-Guang, Zhou, Shi-Guo, Lin, Shi-Shui et al.2023 · 1 citationJournal of back and musculoskeletal rehabilitation. 2023;36(3):709-719
The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes.32005944 · Zhang, Yong, Yang, He, Turra, David et al.2021 · 107 citationsCommunications biology. 2020;3(1):50
Electrostatic confinement and manipulation of DNA molecules for genome analysis.29203667 · Kounovsky-Shafer, Kristy L, Hernandez-Ortiz, Juan P, Potamousis, Konstantinos et al.2018 · 35 citationsProceedings of the National Academy of Sciences of the United States of America. 2017;114(51):13400-13405
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.28851275 · Dallery, Jean-Félix, Lapalu, Nicolas, Zampounis, Antonios et al.2018 · 113 citationsBMC genomics. 2017;18(1):667
Genome Sequence and Annotation of Colletotrichum higginsianum, a Causal Agent of Crucifer Anthracnose Disease.27540062 · Zampounis, Antonios, Pigné, Sandrine, Dallery, Jean-Félix et al.2016 · 40 citationsGenome announcements. 2016;4(4)
Allele-Specific Quantification of Structural Variations in Cancer Genomes.27453446 · Li, Yang, Zhou, Shiguo, Schwartz, David C et al.2019 · 46 citationsCell systems. 2016;3(1):21-34
A gapless genome sequence of the fungus Botrytis cinerea.26913498 · Van Kan, Jan A L, Stassen, Joost H M, Mosbach, Andreas et al.2017 · 322 citationsMolecular plant pathology. 2017;18(1):75-89
Prediction of survival prognosis after surgery in patients with symptomatic metastatic spinal cord compression from non-small cell lung cancer.26541141 · Lei, Mingxing, Liu, Yaosheng, Tang, Chuanghao et al.2016 · 38 citationsBMC cancer. 2015;15:853
A clone-free, single molecule map of the domestic cow (Bos taurus) genome.26314885 · Zhou, Shiguo, Goldstein, Steve, Place, Michael et al.2016 · 15 citationsBMC genomics. 2015;16:644
Tantalum rod implantation for femoral head osteonecrosis: survivorship analysis and determination of prognostic factors for total hip arthroplasty.26257275 · Liu, Yaosheng, Yan, Liang, Zhou, Shiguo et al.2017 · 40 citationsInternational orthopaedics. 2016;40(7):1397-407
Association between VEGF -634G/C polymorphism and osteonecrosis of the femoral head susceptibility: a meta analysis.26379893 · Liu, Yaosheng, Zhang, Zhicheng, Liu, Shubin et al.2015 · 6 citationsInternational journal of clinical and experimental medicine. 2015;8(7):10979-85
Single-molecule analysis reveals widespread structural variation in multiple myeloma.26056298 · Gupta, Aditya, Place, Michael, Goldstein, Steven et al.2015 · 56 citationsProceedings of the National Academy of Sciences of the United States of America. 2015;112(25):7689-94
Chromosome-level genome map provides insights into diverse defense mechanisms in the medicinal fungus Ganoderma sinense.26046933 · Zhu, Yingjie, Xu, Jiang, Sun, Chao et al.2016 · 78 citationsScientific reports. 2015;5:11087
Combined effect of tnf-α polymorphisms and hypoxia on steroid-induced osteonecrosis of femoral head.26045843 · Liu, Yaosheng, Jiang, Weihao, Liu, Shubin et al.2016 · 17 citationsInternational journal of clinical and experimental pathology. 2015;8(3):3215-9
A modified porous tantalum implant technique for osteonecrosis of the femoral head: survivorship analysis and prognostic factors for radiographic progression and conversion to total hip arthroplasty.25932121 · Liu, Yaosheng, Su, Xiuyun, Zhou, Shiguo et al.2015 · 22 citationsInternational journal of clinical and experimental medicine. 2015;8(2):1918-30
[A modified porous tantalum implant technology for osteonecrosis of the femoral head: survival and prognostic evaluations of conversion into total hip arthroplasty].25400049 · Liu, Yaosheng, Liu, Shubin, Zhou, Shiguo et al.2015 · 2 citationsZhonghua yi xue za zhi. 2014;94(31):2429-33
High-coverage sequencing and annotated assemblies of the budgerigar genome.25061512 · Ganapathy, Ganeshkumar, Howard, Jason T, Ward, James M et al.2014 · 81 citationsGigaScience. 2014;3:11
An improved genome release (version Mt4.0) for the model legume Medicago truncatula.24767513 · Tang, Haibao, Krishnakumar, Vivek, Bidwell, Shelby et al.2015 · 468 citationsBMC genomics. 2014;15:312
Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis.23885787 · Ray, Mohana, Goldstein, Steve, Zhou, Shiguo et al.2013 · 32 citationsBMC genomics. 2013;14:505
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
[Efficacies of bone-marrow-derived mononuclear cells with a hydroxylapatite composite in the treatment of osteonecrosis of the femoral head].24284242 · Liu, Yao-sheng, Liu, Shu-bin, Zhou, Shi-guo et al.2014 · 5 citationsZhonghua yi xue za zhi. 2013;93(27):2126-30
Improving mammalian genome scaffolding using large insert mate-pair next-generation sequencing.23590730 · van Heesch, Sebastiaan, Kloosterman, Wigard P, Lansu, Nico et al.2013 · 39 citationsBMC genomics. 2013;14:257
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.24280374 · Kawahara, Yoshihiro, de la Bastide, Melissa, Hamilton, John P et al.2013 · 2,251 citationsRice (New York, N.Y.). 2013;6(1):4
Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.23316438 · Manning, Viola A, Pandelova, Iovanna, Dhillon, Braham et al.2013 · 168 citationsG3 (Bethesda, Md.). 2013;3(1):41-63
Comparative genomics of cryptosporidium.23738321 · Mazurie, Aurélien J, Alves, João M, Ozaki, Luiz S et al.2013 · 37 citationsInternational journal of genomics. 2013;2013:832756
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses.22885923 · O'Connell, Richard J, Thon, Michael R, Hacquard, Stéphane et al.2012 · 1,045 citationsNature genetics. 2012;44(9):1060-5
AGORA: Assembly Guided by Optical Restriction Alignment.22856673 · Lin, Henry C, Goldstein, Steve, Mendelowitz, Lee et al.2013 · 47 citationsBMC bioinformatics. 2012;13:189
Genome sequence of the model medicinal mushroom Ganoderma lucidum.22735441 · Chen, Shilin, Xu, Jiang, Liu, Chang et al.2012 · 579 citationsNature communications. 2012;3:913
Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association.22409516 · Bannantine, John P, Wu, Chia-wei, Hsu, Chungyi et al.2012 · 55 citationsBMC genomics. 2012;13:89
The Medicago genome provides insight into the evolution of rhizobial symbioses.22089132 · Young, Nevin D, Debellé, Frédéric, Oldroyd, Giles E D et al.2012 · 1,276 citationsNature. 2011;480(7378):520-4
High-resolution human genome structure by single-molecule analysis.20534489 · Teague, Brian, Waterman, Michael S, Goldstein, Steven et al.2010 · 175 citationsProceedings of the National Academy of Sciences of the United States of America. 2010;107(24):10848-53
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.20237561 · Ma, Li-Jun, van der Does, H Charlotte, Borkovich, Katherine A et al.2010 · 1,774 citationsNature. 2010;464(7287):367-73
The B73 maize genome: complexity, diversity, and dynamics.19965430 · Schnable, Patrick S, Ware, Doreen, Fulton, Robert S et al.2009 · 4,050 citationsScience (New York, N.Y.). 2009;326(5956):1112-5
Detailed analysis of a contiguous 22-Mb region of the maize genome.19936048 · Wei, Fusheng, Stein, Joshua C, Liang, Chengzhi et al.2010 · 46 citationsPLoS genetics. 2009;5(11):e1000728
The physical and genetic framework of the maize B73 genome.19936061 · Wei, Fusheng, Zhang, Jianwei, Zhou, Shiguo et al.2010 · 104 citationsPLoS genetics. 2009;5(11):e1000715
A single molecule scaffold for the maize genome.19936062 · Zhou, Shiguo, Wei, Fusheng, Nguyen, John et al.2010 · 135 citationsPLoS genetics. 2009;5(11):e1000711
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.19741609 · Haas, Brian J, Kamoun, Sophien, Zody, Michael C et al.2009 · 1,472 citationsNature. 2009;461(7262):393-8
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.19714214 · Coleman, Jeffrey J, Rounsley, Steve D, Rodriguez-Carres, Marianela et al.2009 · 469 citationsPLoS genetics. 2009;5(8):e1000618
Lineage-specific biology revealed by a finished genome assembly of the mouse.19468303 · Church, Deanna M, Goodstadt, Leo, Hillier, Ladeana W et al.2009 · 503 citationsPLoS biology. 2009;7(5):e1000112
Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome.19146697 · Wu, Chia-wei, Schramm, Timothy M, Zhou, Shiguo et al.2009 · 36 citationsBMC genomics. 2009;10:25
Optical mapping discerns genome wide DNA methylation profiles.18667073 · Ananiev, Gene E, Goldstein, Steve, Runnheim, Rod et al.2008 · 39 citationsBMC molecular biology. 2008;9:68
Validation of rice genome sequence by optical mapping.17697381 · Zhou, Shiguo, Bechner, Michael C, Place, Michael et al.2008 · 120 citationsBMC genomics. 2007;8:278
An algorithm for assembly of ordered restriction maps from single DNA molecules.17043225 · Valouev, Anton, Schwartz, David C, Zhou, Shiguo et al.2006 · 118 citationsProceedings of the National Academy of Sciences of the United States of America. 2006;103(43):15770-5
Whole-genome shotgun optical mapping of Rhodospirillum rubrum.16151144 · Reslewic, Susan, Zhou, Shiguo, Place, Mike et al.2005 · 67 citationsApplied and environmental microbiology. 2005;71(9):5511-22
The genome of the kinetoplastid parasite, Leishmania major.16020728 · Ivens, Alasdair C, Peacock, Christopher S, Worthey, Elizabeth A et al.2005 · 1,346 citationsScience (New York, N.Y.). 2005;309(5733):436-42
Shotgun optical mapping of the entire Leishmania major Friedlin genome.15500921 · Zhou, Shiguo, Kile, Andrew, Kvikstad, Erika et al.2005 · 43 citationsMolecular and biochemical parasitology. 2004;138(1):97-106
Single-molecule approach to bacterial genomic comparisons via optical mapping.15516592 · Zhou, Shiguo, Kile, Andrew, Bechner, Michael et al.2004 · 67 citationsJournal of bacteriology. 2004;186(22):7773-82
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