FC
Fernando Calamante
Diffusion MRIMagnetic Resonance ImagingCerebrovascular CirculationneuroscienceConnectomeWhite MatterAlgorithmsArtifactscs.CVDiffusion Magnetic Resonance Imaging
On Valency
published · living versionsW_rtewb4hs·v1 · currentpublished
Interpretable Brain Age Prediction Using White Matter Fiber Orientation Distributions with Rotation-Equivariant Deep Learning
with Chenyang Fan, Robert D. Sanders, Elie Matar, Yixuan Yuan +3
1 version
Preprints & journals
166 papers in the corpus · 1996–2026Spinal cord imaging in multiple sclerosis: from diagnosis to disease progression.42821125 · Koren, Tal J, Dugal, Jashan, Wang, Dongang et al.2026 · 0 citationsJournal of neurology. 2026;273(10)
Sleep spindles are linked to white matter connectivity differentially in older adults with and without cognitive impairment.42582630 · Lam, Aaron, Kong, Shawn Dexiao, Palmer, Jake R et al.2026 · 0 citationsBrain communications. 2026;8(4):fcag303
Streamline-Based Analysis: A novel framework for tractogram-driven streamline-wise statistical inference.42466398 · Zanoni, Simone, Lv, Jinglei, Naismith, Sharon L et al.2026 · 0 citationsResearch square. 2026
A Data-Driven Method to Map the Functional Organisation of Human Brain White Matter2602.18715v1 · Yifei Sun, James M. Shine, Robert D. Sanders et al.2026 · 0 citationsarXiv
Microscopic white matter changes in the cingulum contribute to memory impairment among older adults with obstructive sleep apnea in the memory clinic.41685419 · Lam, Aaron, Almgren, Hannes, Palmer, Jake et al.2026 · 1 citationAlzheimer's & dementia : the journal of the Alzheimer's Association. 2026;22(2):e71197
Reorganisation of Cortico-Hippocampal White Matter Pathways in Healthy Ageing: Evidence for Paradoxical Shifts in Structural Connectivity.41573881 · Dalton, Marshall A, D'Souza, Arkiev, Mahabadian, Anahid Ansari et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2025
Voxel-Level Brain States Prediction Using Swin Transformer.41359725 · Sun, Yifei, Chahine, Daniel, Wen, Qinghao et al.2025 · 4 citationsIEEE journal of biomedical and health informatics. 2025;29(12):8719-8726
Disentangling structure-function relationships between the human hippocampus and the whole brain using track-weighted dynamic functional connectivity.41279306 · Dalton, Marshall A, Lv, Jinglei, Sun, Yifei et al.2025 · 0 citationsbioRxiv : the preprint server for biology. 2025
From Promise to Practical Reality: Transforming Diffusion MRI Analysis with Fast Deep Learning Enhancement2508.10950v2 · Xinyi Wang, Michael Barnett, Frederique Boonstra et al.2025 · 0 citationsarXiv
Age Sensitive Hippocampal Functional Connectivity: New Insights from 3D CNNs and Saliency Mapping.41019221 · Sun, Yifei, Dalton, Marshall A, Sanders, Robert D et al.2025 · 0 citationsArXiv. 2025
The Australian National Total-Body PET Facility-A Shared Resource and Risk Model for Implementing Total-Body PET.40374548 · Bailey, Dale L, Meikle, Steven R, Calamante, Fernando et al.2025 · 1 citationJournal of nuclear medicine : official publication, Society of Nuclear Medicine. 2025;66(7):1005-1006
Managing incidental findings in total body PET/CT studies: balancing ethical considerations and resource constraints.40399723 · Angelis, Georgios I, Ockenden, Katie, Meikle, Steven R et al.2025 · 2 citationsEJNMMI reports. 2025;9(1):18
Quantifying neurodegeneration within subdivisions of core motor pathways in amyotrophic lateral sclerosis using diffusion MRI.39969638 · Almgren, Hannes, Mahoney, Colin J, Huynh, William et al.2025 · 3 citationsJournal of neurology. 2025;272(3):215
Predicting Human Brain States with Transformer2412.19814v1 · Yifei Sun, Mariano Cabezas, Jiah Lee et al.2024 · 5 citationsarXiv
Enhancing Angular Resolution via Directionality Encoding and Geometric Constraints in Brain Diffusion Tensor Imaging2409.07186v2 · Sheng Chen, Zihao Tang, Mariano Cabezas et al.2024 · 1 citationarXiv
Improving multiple sclerosis lesion segmentation across clinical sites: A federated learning approach with noise-resilient training.38701636 · Bai, Lei, Wang, Dongang, Wang, Hengrui et al.2024 · 33 citationsArtificial intelligence in medicine. 2024;152:102872
How Much Data are Enough? Investigating Dataset Requirements for Patch-Based Brain MRI Segmentation Tasks2404.03451v1 · Dongang Wang, Peilin Liu, Hengrui Wang et al.2024 · 0 citationsarXiv
Data-driven normative values based on generative manifold learning for quantitative MRI.38555415 · Attyé, Arnaud, Renard, Félix, Anglade, Vanina et al.2024 · 10 citationsScientific reports. 2024;14(1):7563
A novel method for PET connectomics guided by fibre-tracking MRI: Application to Alzheimer's disease.38491564 · Sun, Zhuopin, Naismith, Sharon L, Meikle, Steven et al.2024 · 5 citationsHuman brain mapping. 2024;45(4):e26659
High angular diffusion tensor imaging estimation from minimal evenly distributed diffusion gradient directions.37766937 · Tang, Zihao, Chen, Sheng, D'Souza, Arkiev et al.2023 · 6 citationsFrontiers in radiology. 2023;3:1238566
MRI tractography-guided PET image reconstruction regularisation using connectome-based nonlocal means filtering.37285850 · Sun, Zhuopin, Angelis, Georgios, Meikle, Steven et al.2023 · 2 citationsPhysics in medicine and biology. 2023;68(13)
Parallel processing relies on a distributed, low-dimensional cortico-cerebellar architecture.37397895 · Müller, Eli J, Palesi, Fulvia, Hou, Kevin Y et al.2023 · 6 citationsNetwork neuroscience (Cambridge, Mass.). 2023;7(2):844-863
Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning.37274196 · Liu, Dongnan, Cabezas, Mariano, Wang, Dongang et al.2024 · 17 citationsFrontiers in neuroscience. 2023;17:1167612
Tremor suppression following treatment with MRgFUS: skull density ratio consistency and degree of posterior dentatorubrothalamic tract lesioning predicts long-term clinical outcomes in essential tremor.37181561 · Kyle, Kain, Maller, Jerome, Barnett, Yael et al.2023 · 18 citationsFrontiers in neurology. 2023;14:1129430
MFCSC: Novel method to calculate mismatch between functional and structural brain connectomes, and its application for detecting hemispheric functional specialisations.36882426 · Civier, Oren, Sourty, Marion, Calamante, Fernando2023 · 2 citationsScientific reports. 2023;13(1):3485
Individualised profiling of white matter organisation in moderate-to-severe traumatic brain injury patients.36813064 · Clemente, Adam, Attyé, Arnaud, Renard, Félix et al.2023 · 14 citationsBrain research. 2023;1806:148289
Erratum to: Gradual changes in microarchitectural properties of cortex and juxtacortical white matter: Observed by anatomical and diffusion MRI (Magn Reson Med. 2022; 88: 2485-2503).36763838 · Ali, Tonima S, Lv, Jinglei, Calamante, Fernando2023 · 0 citationsMagnetic resonance in medicine. 2023;89(5):2142-2144
Hippocampal Neuronal Integrity and Functional Connectivity Within the Default Mode Network in Mild Cognitive Impairment: A Multimodal Investigation.36367166 · DeMayo, Marilena M, Lv, Jinglei, Duffy, Shantel L et al.2023 · 4 citationsBrain connectivity. 2023;13(3):143-153
Walking With the ISMRM in the Footprints of Our MR History.36353846 · Mandija, Stefano, Ma, Chao, Bai, Ruiliang et al.2023 · 0 citationsJournal of magnetic resonance imaging : JMRI. 2023;57(6):1934-1936
Walking with the ISMRM in the footprints of our MR history.36353850 · Mandija, Stefano, Ma, Chao, Bai, Ruiliang et al.2022 · 0 citationsMagnetic resonance in medicine. 2023;89(3):883-885
New insights into anatomical connectivity along the anterior-posterior axis of the human hippocampus using in vivo quantitative fibre tracking.36345716 · Dalton, Marshall A, D'Souza, Arkiev, Lv, Jinglei et al.2022 · 86 citationseLife. 2022;11
Building a tissue-unbiased brain template of fiber orientation distribution and tractography with multimodal registration.36299169 · Lv, Jinglei, Zeng, Rui, Ho, Mai Phuong et al.2022 · 17 citationsMagnetic resonance in medicine. 2023;89(3):1207-1220
Gradual changes in microarchitectural properties of cortex and juxtacortical white matter: Observed by anatomical and diffusion MRI.36045582 · Ali, Tonima S, Lv, Jinglei, Calamante, Fernando2022 · 8 citationsMagnetic resonance in medicine. 2022;88(6):2485-2503
Structural connections between the noradrenergic and cholinergic system shape the dynamics of functional brain networks.35809888 · Taylor, N L, D'Souza, A, Munn, B R et al.2022 · 42 citationsNeuroImage. 2022;260:119455
CONN-NLM: A Novel CONNectome-Based Non-local Means Filter for PET-MRI Denoising.35712456 · Sun, Zhuopin, Meikle, Steven, Calamante, Fernando2024 · 4 citationsFrontiers in neuroscience. 2022;16:824431
Network communication models narrow the gap between the modular organization of structural and functional brain networks.35605765 · Seguin, Caio, Mansour L, Sina, Sporns, Olaf et al.2022 · 64 citationsNeuroImage. 2022;257:119323
MS Lesion Segmentation: Revisiting Weighting Mechanisms for Federated Learning2205.01509v1 · Dongnan Liu, Mariano Cabezas, Dongang Wang et al.2022 · 1 citationarXiv
Building a Tissue-unbiased Brain Template of Fibre Orientation Distribution and Tractography with Multimodal Registration10.1101/2022.04.13.488117v1 · Lv, J., Zeng, R., Ho, M. P. et al.2022 · 2 citationsbioRxiv
FOD-Net: A deep learning method for fiber orientation distribution angular super resolution.35397471 · Zeng, Rui, Lv, Jinglei, Wang, He et al.2022 · 34 citationsMedical image analysis. 2022;79:102431
Individualised Profiling of White Matter Organisation in Moderate-to-Severe Traumatic Brain Injury Patients Using TractLearn: A Proof-of-Concept Study10.1101/2022.03.03.22271839v1 · Clemente, A., Attye, A., Renard, F. et al.2022 · 1 citationmedRxiv
A robust framework for characterising diffusion metrics of the median and ulnar nerves: Exploiting state-of-the-art tracking methods.34908209 · D'Souza, Arkiev, Wang, Chenyu, Tu, Sicong et al.2022 · 4 citationsJournal of the peripheral nervous system : JPNS. 2022;27(1):67-83
Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?34433094 · Schilling, Kurt G, Rheault, François, Petit, Laurent et al.2022 · 182 citationsNeuroImage. 2021;243:118502
Investigating white matter structure in social anxiety disorder using fixel-based analysis.34438201 · Gorman, Ben D A, Calamante, Fernando, Civier, Oren et al.2021 · 8 citationsJournal of psychiatric research. 2021;143:30-37
Automated Perfusion-Diffusion Magnetic Resonance Imaging in Childhood Arterial Ischemic Stroke.34404238 · Visser, Melissa J, Yang, Joseph Yuan-Mou, Calamante, Fernando et al.2022 · 11 citationsStroke. 2021;52(10):3296-3304
Rest-activity functioning is related to white matter microarchitecture and modifiable risk factors in older adults at-risk for dementia.33428761 · Palmer, Jake R, Duffy, Shantel L, Meares, Susanne et al.2021 · 16 citationsSleep. 2021;44(7)
IVIM-DKI for differentiation between prostate cancer and benign prostatic hyperplasia: comparison of 1.5 T vs. 3 T MRI.34052899 · Malagi, Archana Vadiraj, Netaji, Arjunlokesh, Kumar, Virendra et al.2022 · 28 citationsMagma (New York, N.Y.). 2022;35(4):609-620
TractLearn: A geodesic learning framework for quantitative analysis of brain bundles.33689863 · Attyé, Arnaud, Renard, Félix, Baciu, Monica et al.2021 · 18 citationsNeuroImage. 2021;233:117927
A functional-structural connectivity metric detects ipsilateral connections with distinct functional specialisation in each hemisphere10.1101/2020.12.03.410902v1 · Civier, O., Sourty, M., Calamante, F.2020 · 0 citationsbioRxiv
Individual deviations from normative models of brain structure in a large cross-sectional schizophrenia cohort.32963336 · Lv, Jinglei, Di Biase, Maria, Cash, Robin F H et al.2022 · 167 citationsMolecular psychiatry. 2021;26(7):3512-3523
Notes on "A cautionary note on the use of SIFT in pathological connectomes".32716098 · Smith, Robert E, Calamante, Fernando, Connelly, Alan2020 · 5 citationsMagnetic resonance in medicine. 2020;84(5):2303-2307
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