JH
Jason Howard
GenomeGene Expression RegulationgenomicsPhylogenyBiological EvolutionEvolution, MolecularparrotTranscriptomeVocalization, AnimalAmazona aestiva
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
27 papers in the corpus · 1999–2023Species-wide genomics of kākāpō provides tools to accelerate recovery.37640765 · Guhlin, Joseph, Le Lec, Marissa F, Wold, Jana et al.2023 · 50 citationsNature ecology & evolution. 2023;7(10):1693-1705
Population genomics of the critically endangered kākāpō.36777713 · Dussex, Nicolas, van der Valk, Tom, Morales, Hernán E et al.2026 · 226 citationsCell genomics. 2021;1(1):100002
Author Correction: Dense sampling of bird diversity increases power of comparative genomics.33833441 · Feng, Shaohong, Stiller, Josefin, Deng, Yuan et al.2021 · 12 citationsNature. 2021;592(7856):E24
Towards complete and error-free genome assemblies of all vertebrate species.33911273 · Rhie, Arang, McCarthy, Shane A, Fedrigo, Olivier et al.2022 · 3,205 citationsNature. 2021;592(7856):737-746
Dense sampling of bird diversity increases power of comparative genomics.33177665 · Feng, Shaohong, Stiller, Josefin, Deng, Yuan et al.2020 · 469 citationsNature. 2020;587(7833):252-257
Parrot Genomes and the Evolution of Heightened Longevity and Cognition.30528582 · Wirthlin, Morgan, Lima, Nicholas C B, Guedes, Rafael Lucas Muniz et al.2019 · 89 citationsCurrent biology : CB. 2018;28(24):4001-4008.e7
Divergence in problem-solving skills is associated with differential expression of glutamate receptors in wild finches.29546239 · Audet, Jean-Nicolas, Kayello, Lima, Ducatez, Simon et al.2019 · 30 citationsScience advances. 2018;4(3):eaao6369
De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads.29020750 · Korlach, Jonas, Gedman, Gregory, Kingan, Sarah B et al.2018 · 239 citationsGigaScience. 2017;6(10):1-16
De Novo PacBio long-read and phased avian genome assemblies correct and add to genes important in neuroscience research10.1101/103911v2 · Korlach, J., Gedman, G., Kingan, S. et al.2017 · 13 citationsbioRxiv
Characterization and genetic manipulation of primed stem cells into a functional naïve state with ESRRB.27822342 · Rossello, Ricardo Antonio, Pfenning, Andreas, Howard, Jason T et al.2020 · 5 citationsWorld journal of stem cells. 2016;8(10):355-366
Phylogenomic analyses data of the avian phylogenomics project.25741440 · Jarvis, Erich D, Mirarab, Siavash, Aberer, Andre J et al.2016 · 101 citationsGigaScience. 2015;4:4
Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners.25424606 · Wang, Rui, Chen, Chun-Chun, Hara, Erina et al.2015 · 74 citationsThe Journal of comparative neurology. 2015;523(6):892-906
Whole-genome analyses resolve early branches in the tree of life of modern birds.25504713 · Jarvis, Erich D, Mirarab, Siavash, Aberer, Andre J et al.2014 · 1,897 citationsScience (New York, N.Y.). 2014;346(6215):1320-31
Core and region-enriched networks of behaviorally regulated genes and the singing genome.25504732 · Whitney, Osceola, Pfenning, Andreas R, Howard, Jason T et al.2014 · 117 citationsScience (New York, N.Y.). 2014;346(6215):1256780
Convergent transcriptional specializations in the brains of humans and song-learning birds.25504733 · Pfenning, Andreas R, Hara, Erina, Whitney, Osceola et al.2014 · 463 citationsScience (New York, N.Y.). 2014;346(6215):1256846
Comparative genomics reveals insights into avian genome evolution and adaptation.25504712 · Zhang, Guojie, Li, Cai, Li, Qiye et al.2014 · 1,072 citationsScience (New York, N.Y.). 2014;346(6215):1311-20
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.25504731 · Green, Richard E, Braun, Edward L, Armstrong, Joel et al.2014 · 359 citationsScience (New York, N.Y.). 2014;346(6215):1254449
High-coverage sequencing and annotated assemblies of the budgerigar genome.25061512 · Ganapathy, Ganeshkumar, Howard, Jason T, Ward, James M et al.2014 · 81 citationsGigaScience. 2014;3:11
Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns.23818122 · Jarvis, Erich D, Yu, Jing, Rivas, Miriam V et al.2014 · 224 citationsThe Journal of comparative neurology. 2013;521(16):3614-65
Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species.24015354 · Rosselló, Ricardo Antonio, Chen, Chun-Chun, Dai, Rui et al.2016 · 91 citationseLife. 2013;2:e00036
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
Hybrid error correction and de novo assembly of single-molecule sequencing reads.22750884 · Koren, Sergey, Schatz, Michael C, Walenz, Brian P et al.2012 · 1,012 citationsNature biotechnology. 2012;30(7):693-700
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.22293439 · St John, John A, Braun, Edward L, Isberg, Sally R et al.2012 · 132 citationsGenome biology. 2012;13(1):415
The genome of a songbird.20360741 · Warren, Wesley C, Clayton, David F, Ellegren, Hans et al.2010 · 810 citationsNature. 2010;464(7289):757-62
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.17018643 · Wada, Kazuhiro, Howard, Jason T, McConnell, Patrick et al.2006 · 195 citationsProceedings of the National Academy of Sciences of the United States of America. 2006;103(41):15212-7
T-type calcium channel regulation by specific G-protein betagamma subunits.12853961 · Wolfe, Joshua T, Wang, Hongge, Howard, Jason et al.2003 · 152 citationsNature. 2003;424(6945):209-13
Heteroduplex cleavage analysis using S1 nuclease.10407654 · Howard, J T, Ward, J, Watson, J N et al.1999 · 15 citationsBioTechniques. 1999;27(1):18-9
Career total: 56 works. 27 are in this corpus.
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