JN
Juan Nunez-Iglesias
cs.CVPythonAlgorithmsGene Expression ProfilingbioinformaticsBlood PlateletsneurosciencePhenotypethrombosisThrombosis
On Valency
published · living versionsW_tt23xupg·v1 · currentpublished
scikit-image: Image processing in Python
with Stefan van der Walt, Johannes L. Schönberger, François Boulogne, Joshua D. Warner +4
1 version
Preprints & journals
29 papers in the corpus · 2005–2025Geometric indicators of local plasticity in glasses measured by scanning small-beam diffraction.41312672 · Liu, Amelia C Y, Pham, Huyen, Bera, Arabinda et al.2026 · 4 citationsActa crystallographica. Section A, Foundations and advances. 2026;82(Pt 1):4-17
Confining thrombus morphospace through targeted inhibition of platelet mechanosensory signaling.40907704 · Larsson, Pia, McGovern, Abigail, Tarlac, Volga et al.2026 · 0 citationsJournal of thrombosis and haemostasis : JTH. 2026;24(1):255-270
Finding and following: a deep learning-based pipeline for tracking platelets during thrombus formation in vivo and ex vivo.38722090 · McGovern, Abigail S, Larsson, Pia, Tarlac, Volga et al.2024 · 6 citationsPlatelets. 2024;35(1):2344512
Identification of a Stress-Sensitive Anorexigenic Neurocircuit From Medial Prefrontal Cortex to Lateral Hypothalamus.36400605 · Clarke, Rachel E, Voigt, Katharina, Reichenbach, Alex et al.2023 · 26 citationsBiological psychiatry. 2023;93(4):309-321
In Vivo Photometry Reveals Insulin and 2-Deoxyglucose Maintain Prolonged Inhibition of VMH Vglut2 Neurons in Male Mice.35788848 · Rawlinson, Sasha, Reichenbach, Alex, Clarke, Rachel E et al.2022 · 2 citationsEndocrinology. 2022;163(8)
Metabolic-sensing in AgRP neurons integrates homeostatic state with dopamine signalling in the striatum10.1101/2021.03.22.436393v2 · Reichenbach, A., Clarke, R., Stark, R. et al.2021 · 59 citationsbioRxiv
Interactive design of GPU-accelerated Image Data Flow Graphs and cross-platform deployment using multi-lingual code generation10.1101/2020.11.19.386565v1 · Haase, R., Jain, A., Rigaud, S. et al.2020 · 20 citationsbioRxiv
The knob protein KAHRP assembles into a ring-shaped structure that underpins virulence complex assembly.31071194 · Looker, Oliver, Blanch, Adam J, Liu, Boyin et al.2019 · 36 citationsPLoS pathogens. 2019;15(5):e1007761
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain1805.02718v1 · Larissa Heinrich, Jan Funke, Constantin Pape et al.2018 · 116 citationsarXiv
A new Python library to analyse skeleton images confirms malaria parasite remodelling of the red blood cell membrane skeleton.29472997 · Nunez-Iglesias, Juan, Blanch, Adam J, Looker, Oliver et al.2020 · 110 citationsPeerJ. 2018;6:e4312
Aurora Kinase B, a novel regulator of TERF1 binding and telomeric integrity.29040668 · Chan, Foong Lyn, Vinod, Benjamin, Novy, Karel et al.2017 · 21 citationsNucleic acids research. 2017;45(21):12340-12353
Analyzing microtomography data with Python and the scikit-image library.29142808 · Gouillart, Emmanuelle, Nunez-Iglesias, Juan, van der Walt, Stéfan2020 · 37 citationsAdvanced structural and chemical imaging. 2017;2(1):18
The Astropy Problem1610.03159v1 · Demitri Muna, Michael Alexander, Alice Allen et al.2016 · 15 citationsarXiv
Synaptic circuits and their variations within different columns in the visual system of Drosophila.26483464 · Takemura, Shin-ya, Xu, C Shan, Lu, Zhiyuan et al.2016 · 264 citationsProceedings of the National Academy of Sciences of the United States of America. 2015;112(44):13711-6
scikit-image: image processing in Python.25024921 · van der Walt, Stéfan, Schönberger, Johannes L, Nunez-Iglesias, Juan et al.2014 · 6,826 citationsPeerJ. 2014;2:e453on Valency
Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages.24772079 · Nunez-Iglesias, Juan, Kennedy, Ryan, Plaza, Stephen M et al.2014 · 50 citationsFrontiers in neuroinformatics. 2014;8:34
Machine learning of hierarchical clustering to segment 2D and 3D images.23977123 · Nunez-Iglesias, Juan, Kennedy, Ryan, Parag, Toufiq et al.2014 · 170 citationsPloS one. 2013;8(8):e71715
Electron Microscopy Reconstruction of Brain Structure Using Sparse Representations Over Learned Dictionaries.23925366 · Tao Hu, Nunez-Iglesias, Juan, Vitaladevuni, Shiv et al.2017 · 12 citationsIEEE transactions on medical imaging. 2013;32(12):2179-88
Super-resolution using Sparse Representations over Learned Dictionaries: Reconstruction of Brain Structure using Electron Microscopy1210.0564v1 · Tao Hu, Juan Nunez-Iglesias, Shiv Vitaladevuni et al.2012 · 6 citationsarXiv
Betamax: towards optimal sampling strategies for high-throughput screens.22697247 · Grover, Dhruv, Nunez-Iglesias, Juan2012 · 1 citationJournal of computational biology : a journal of computational molecular cell biology. 2012;19(6):776-84
Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation.20126538 · Nunez-Iglesias, Juan, Liu, Chun-Chi, Morgan, Todd E et al.2010 · 321 citationsPloS one. 2010;5(2):e8898
An integrative modular approach to systematically predict gene-phenotype associations.20122238 · Mehan, Michael R, Nunez-Iglesias, Juan, Dai, Chao et al.2010 · 11 citationsBMC bioinformatics. 2010;11 Suppl 1:S62
Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach.19728875 · Wang, Wenhui, Nunez-Iglesias, Juan, Luan, Yihui et al.2010 · 3 citationsBMC bioinformatics. 2009;10:277
An integrative network approach to map the transcriptome to the phenome.19630539 · Mehan, Michael R, Nunez-Iglesias, Juan, Kalakrishnan, Mrinal et al.2009 · 13 citationsJournal of computational biology : a journal of computational molecular cell biology. 2009;16(8):1023-34
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.18366601 · Xu, Min, Kao, Ming-Chih J, Nunez-Iglesias, Juan et al.2008 · 75 citationsBMC genomics. 2008;9 Suppl 1:S12
Gene Aging Nexus: a web database and data mining platform for microarray data on aging.17090592 · Pan, Fei, Chiu, Chi-Hsien, Pulapura, Sudip et al.2007 · 56 citationsNucleic acids research. 2007;35(Database issue):D756-9
Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data.16672260 · Pan, Fei, Kamath, Kiran, Zhang, Kangyu et al.2006 · 15 citationsBioinformatics (Oxford, England). 2006;22(13):1665-7
Recruitment of the adaptor protein 2 complex by the human immunodeficiency virus type 2 envelope protein is necessary for high levels of virus release.16501101 · Noble, Beth, Abada, Paolo, Nunez-Iglesias, Juan et al.2006 · 39 citationsJournal of virology. 2006;80(6):2924-32
Functional annotation and network reconstruction through cross-platform integration of microarray data.15654329 · Zhou, Xianghong Jasmine, Kao, Ming-Chih J, Huang, Haiyan et al.2005 · 152 citationsNature biotechnology. 2005;23(2):238-43
Career total: 97 works. 29 are in this corpus.
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