SB
Sébastien Boisvert
Databases, GeneticGenome, BacterialGenome, ProtozoanSoftwareAgricultureAlgorithmsAmerican eelAmino AcidsAnguilla rostratabioinformatics
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
21 papers in the corpus · 2008–2022Flexible protein database based on amino acid k-mers.35650262 · Déraspe, Maxime, Boisvert, Sébastien, Laviolette, François et al.2022 · 9 citationsScientific reports. 2022;12(1):9101
Fast protein database as a service with kAAmer10.1101/2020.04.01.019984v1 · Deraspe, M., Boisvert, S., Laviolette, F. et al.2020 · 2 citationsbioRxiv
Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome.30115128 · Keeble-Gagnère, Gabriel, Rigault, Philippe, Tibbits, Josquin et al.2018 · 85 citationsGenome biology. 2018;19(1):112
Phenetic Comparison of Prokaryotic Genomes Using k-mers.28957508 · Déraspe, Maxime, Raymond, Frédéric, Boisvert, Sébastien et al.2017 · 20 citationsMolecular biology and evolution. 2017;34(10):2716-2729
Genome Sequences of Two Brucella suis Strains Isolated from the Same Patient, 8 Years Apart.28254974 · Viana, Marcus Vinicius Canário, Wattam, Alice Rebecca, Govil Batra, Dhwani et al.2020 · 1 citationGenome announcements. 2017;5(9)
Genome Sequences of Three Brucella canis Strains Isolated from Humans and a Dog.28232424 · Viana, Marcus Vinicius Canário, Wattam, Alice Rebecca, Govil Batra, Dhwani et al.2020 · 5 citationsGenome announcements. 2017;5(8)
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.27899627 · Wattam, Alice R, Davis, James J, Assaf, Rida et al.2017 · 1,660 citationsNucleic acids research. 2017;45(D1):D535-D542
Draft genome of the American Eel (Anguilla rostrata).27754597 · Pavey, Scott A, Laporte, Martin, Normandeau, Eric et al.2018 · 21 citationsMolecular ecology resources. 2017;17(4):806-811
Antimicrobial Resistance Prediction in PATRIC and RAST.27297683 · Davis, James J, Boisvert, Sébastien, Brettin, Thomas et al.2018 · 243 citationsScientific reports. 2016;6:27930
Human Analysts at Superhuman Scales: What Has Friendly Software To Do?27447255 · Godzaridis, Élénie, Boisvert, Sébastien, Xia, Fangfang et al.2016 · 1 citationBig data. 2013;1(4):227-36
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
Telomeric gene deletion and intrachromosomal amplification in antimony-resistant Leishmania.23421749 · Mukherjee, Angana, Boisvert, Sébastien, Monte-Neto, Rubens Lima do et al.2013 · 77 citationsMolecular microbiology. 2013;88(1):189-202
Ray Meta: scalable de novo metagenome assembly and profiling.23259615 · Boisvert, Sébastien, Raymond, Frédéric, Godzaridis, Elénie et al.2015 · 591 citationsGenome biology. 2012;13(12):R122
Multiple mutations in heterogeneous miltefosine-resistant Leishmania major population as determined by whole genome sequencing.22348164 · Coelho, Adriano C, Boisvert, Sébastien, Mukherjee, Angana et al.2012 · 108 citationsPLoS neglected tropical diseases. 2012;6(2):e1512
Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the intracellular stage of human pathogenic species.21998295 · Raymond, Frédéric, Boisvert, Sébastien, Roy, Gaétan et al.2012 · 172 citationsNucleic acids research. 2012;40(3):1131-47
Endonucleases: tools to correct the dystrophin gene.21954090 · Rousseau, Joel, Chapdelaine, Pierre, Boisvert, Sébastien et al.2012 · 42 citationsThe journal of gene medicine. 2011;13(10):522-37
Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.20958248 · Boisvert, Sébastien, Laviolette, François, Corbeil, Jacques2011 · 540 citationsJournal of computational biology : a journal of computational molecular cell biology. 2010;17(11):1519-33
Comparison of automated microarray detection with real-time PCR assays for detection of respiratory viruses in specimens obtained from children.19158263 · Raymond, Frédéric, Carbonneau, Julie, Boucher, Nancy et al.2009 · 105 citationsJournal of clinical microbiology. 2009;47(3):743-50
HIV-1 coreceptor usage prediction without multiple alignments: an application of string kernels.19055831 · Boisvert, Sébastien, Marchand, Mario, Laviolette, François et al.2009 · 29 citationsRetrovirology. 2008;5:110
Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between the two species.18510761 · Rochette, Annie, Raymond, Frédéric, Ubeda, Jean-Michel et al.2008 · 143 citationsBMC genomics. 2008;9:255
Modulation of gene expression in drug resistant Leishmania is associated with gene amplification, gene deletion and chromosome aneuploidy.18638379 · Ubeda, Jean-Michel, Légaré, Danielle, Raymond, Frédéric et al.2008 · 175 citationsGenome biology. 2008;9(7):R115
Career total: 60 works. 21 are in this corpus.
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