CK
Claus Kadelka
q-bio.MNmath.DSGene Regulatory Networksphysics.bio-phcs.DMBoolean networksepidemiologymath.COsystems biologybioinformatics
On Valency
published · living versionsW_bgppubyz·v1 · currentpublished
Permutation order governs basin entropy in critical one-input Boolean networks
with Ruodan Liu, Ahana Ghosh, Sean Campbell, Venkata Sai Narayana Bavisetty +1
1 version
Preprints & journals
52 papers in the corpus · 2013–2026Party identification and public attitudes toward raw milk, water fluoridation, and acetaminophen use.42787636 · Viskupič, Filip, Wiltse, David L, Mahmud, Md Shahriar et al.2026 · 0 citationsHealth affairs scholar. 2026;4(9):qxag237
Permutation theory governs long-term dynamics of critical Boolean networks.42922767 · Bavisetty, Venkata Sai Narayana, Wheeler, Matthew, Vignes, Julian et al.2026 · 0 citationsArXiv. 2026
BoolForge: controlled generation and analysis of Boolean functions and networks.42536417 · Kadelka, Claus, Coberly, Benjamin2026 · 1 citationBioinformatics (Oxford, England). 2026;42(8)
Dynamics Decomposition of Boolean Networks: An algebraic foundation2607.21795v1 · Alan Veliz-Cuba, Claus Kadelka, David Murrugarra et al.2026 · 0 citationsarXiv
Correcting hidden sampling biases in null models of canalizing Boolean networks2606.05196v2 · Ahana Ghosh, Claus Kadelka2026 · 0 citationsarXiv
CLEAR: Concise List Enrichment Analysis Reducing Redundancy10.64898/2026.03.30.715378v2 · Jia, X., Phan, A., Dorman, K. et al.2026 · 0 citationsbioRxiv
Canalization as a stabilizing principle of gene regulatory networks: a discrete dynamical systems perspective.41580437 · Kadelka, Claus2026 · 2 citationsNPJ systems biology and applications. 2026;12(1)
A mathematical model informs optimal fungicide use against Sclerotinia stem rot to maximize profits in soybean production.41335354 · Byer, Tanner, Hatfield, Tad, Kadelka, Claus2025 · 0 citationsBulletin of mathematical biology. 2025;87(12):183
Attractors are less stable than their basins: Canalization creates a coherence gap in gene regulatory networks.41279382 · Bavisetty, Venkata Sai Narayana, Wheeler, Matthew, Kadelka, Claus2025 · 1 citationbioRxiv : the preprint server for biology. 2025
On the number of non-degenerate canalizing Boolean functions2510.26556v1 · Claus Kadelka2025 · 1 citationarXiv
Infection with Mycobacterium tuberculosis alters the antibody response to HIV-1.40802847 · Zeeb, Marius, Kusejko, Katharina, Hartnack, Sonja et al.2025 · 3 citationsPLoS pathogens. 2025;21(8):e1013350
Critical assessment of the ability of Boolean threshold models to describe gene regulatory network dynamics.40809087 · Kadelka, Claus, Hari, Kishore2025 · 8 citationsPNAS nexus. 2025;4(8):pgaf228
Invasive species control via a discrete model for the Trojan Y-chromosome strategy2506.14023v1 · Don K. Mallawa Arachchi, Rana D. Parshad, Claus Kadelka2025 · 0 citationsarXiv
Upper bound for the stability of Boolean networks.40980754 · Bavisetty, Venkata Sai Narayana, Wheeler, Matthew, Laubenbacher, Reinhard et al.2025 · 1 citationArXiv. 2025
Adaptive human behavior and delays in information availability autonomously modulate epidemic waves.40432904 · Mahmud, Md Shahriar, Eshun, Solomon, Espinoza, Baltazar et al.2025 · 10 citationsPNAS nexus. 2025;4(5):pgaf145
A longitudinal analysis of function annotations of the human proteome reveals consistently high biases.40338520 · Phan, An, Joshi, Parnal, Kadelka, Claus et al.2025 · 2 citationsDatabase : the journal of biological databases and curation. 2025;2025
Impacts of competition and phenotypic plasticity on the viability of adaptive therapy.40196605 · Vibishan, B, Jain, Paras, Sharma, Vedant et al.2025 · 2 citationsbioRxiv : the preprint server for biology. 2025
Model-informed optimal allocation of limited resources to mitigate infectious disease outbreaks in societies at war.39501756 · Srivastava, Vaibhava, Sarkar, Drik, Kadelka, Claus2024 · 3 citationsJournal of the Royal Society, Interface. 2024;21(220):20240575
Canalization reduces the nonlinearity of regulation in biological networks.38871768 · Kadelka, Claus, Murrugarra, David2024 · 13 citationsNPJ systems biology and applications. 2024;10(1):67
Diffusion and Chemical Degradation of Vitamin B6 in Chickpeas (Cicer arietinum L.) during Hydrothermal Treatments: A Kinetic Approach.38928789 · Shaban, Heba, Kadelka, Claus, Clark, Stephanie et al.2024 · 6 citationsFoods (Basel, Switzerland). 2024;13(12)
Learning from the COVID-19 pandemic: a systematic review of mathematical vaccine prioritization models.38496570 · Gonzalez-Parra, Gilberto, Mahmud, Md Shahriar, Kadelka, Claus2024 · 12 citationsmedRxiv : the preprint server for health sciences. 2024
Modular control of Boolean network models.38344220 · Murrugarra, David, Veliz-Cuba, Alan, Dimitrova, Elena et al.2026 · 2 citationsArXiv. 2024
A meta-analysis of Boolean network models reveals design principles of gene regulatory networks.38215198 · Kadelka, Claus, Butrie, Taras-Michael, Hilton, Evan et al.2024 · 61 citationsScience advances. 2024;10(2):eadj0822
Modular Construction of Boolean Networks2402.00022v1 · Matthew Wheeler, Claus Kadelka, Alan Veliz-Cuba et al.2024 · 2 citationsarXiv
Modularity of biological systems: a link between structure and function.37745485 · Kadelka, Claus, Wheeler, Matthew, Veliz-Cuba, Alan et al.2024 · 30 citationsbioRxiv : the preprint server for biology. 2023
Concise functional enrichment of ranked gene lists10.1101/2023.06.30.547164v1 · Jia, X., Phan, A., Kadelka, C.2023 · 0 citationsbioRxiv
Projecting social contact matrices to populations stratified by binary attributes with known homophily.36899581 · Kadelka, Claus2023 · 8 citationsMathematical biosciences and engineering : MBE. 2023;20(2):3282-3300
Ethnic homophily affects vaccine prioritization strategies.36208667 · Kadelka, Claus, Islam, Md Rafiul, McCombs, Audrey et al.2022 · 12 citationsJournal of theoretical biology. 2022;555:111295
Stability of Linear Boolean Networks2209.02044v2 · Karthik Chandrasekhar, Claus Kadelka, Reinhard Laubenbacher et al.2022 · 5 citationsPhysica D: Nonlinear Phenomena, 451, 133775, 2023
Decomposition of Boolean networks: An approach to modularity of biological systems2206.04217v1 · Claus Kadelka, Reinhard Laubenbacher, David Murrugarra et al.2022 · 1 citationarXiv
Effect of homophily and correlation of beliefs on COVID-19 and general infectious disease outbreaks.34855929 · Kadelka, Claus, McCombs, Audrey2021 · 23 citationsPloS one. 2021;16(12):e0260973
Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.34795280 · Friedrich, Nikolas, Stiegeler, Emanuel, Glögl, Matthias et al.2021 · 17 citationsNature communications. 2021;12(1):6705
Evaluation of the United States COVID-19 vaccine allocation strategy.34788345 · Islam, Md Rafiul, Oraby, Tamer, McCombs, Audrey et al.2024 · 33 citationsPloS one. 2021;16(11):e0259700
Phylogenetic Cluster Analysis Identifies Virological and Behavioral Drivers of Human Immunodeficiency Virus Transmission in Men Who Have Sex With Men.32300807 · Bachmann, Nadine, Kusejko, Katharina, Nguyen, Huyen et al.2021 · 17 citationsClinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2021;72(12):2175-2183
Revealing the canalizing structure of Boolean functions: Algorithms and applications2106.06580v2 · Elena Dimitrova, Brandilyn Stigler, Claus Kadelka et al.2021 · 15 citationsAutomatica, 146 (2022)
A model-based evaluation of the efficacy of COVID-19 social distancing, testing and hospital triage policies.33057438 · McCombs, Audrey, Kadelka, Claus2020 · 25 citationsPLoS computational biology. 2020;16(10):e1008388
Collectively canalizing Boolean functions2008.13741v3 · Claus Kadelka, Benjamin Keilty, Reinhard Laubenbacher2020 · 11 citationsAdvances in Applied Mathematics 145 (2023): 102475
Correlates of broadly neutralizing antibody development.31107283 · Abela, Irene A, Kadelka, Claus, Trkola, Alexandra2020 · 11 citationsCurrent opinion in HIV and AIDS. 2019;14(4):279-285
Widespread B cell perturbations in HIV-1 infection afflict naive and marginal zone B cells.31221742 · Liechti, Thomas, Kadelka, Claus, Braun, Dominique L et al.2020 · 35 citationsThe Journal of experimental medicine. 2019;216(9):2071-2090
Importance of routine viral load monitoring: higher levels of resistance at ART failure in Uganda and Lesotho compared with Switzerland.30476115 · Bachmann, Nadine, von Braun, Amrei, Labhardt, Niklaus D et al.2020 · 12 citationsThe Journal of antimicrobial chemotherapy. 2019;74(2):468-472
Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study.30250751 · Kusejko, Katharina, Kadelka, Claus, Marzel, Alex et al.2021 · 23 citationsVirus evolution. 2018;4(2):vey024
Tracing HIV-1 strains that imprint broadly neutralizing antibody responses.30202088 · Kouyos, Roger D, Rusert, Peter, Kadelka, Claus et al.2019 · 53 citationsNature. 2018;561(7723):406-410
Distinct, IgG1-driven antibody response landscapes demarcate individuals with broadly HIV-1 neutralizing activity.29794117 · Kadelka, Claus, Liechti, Thomas, Ebner, Hanna et al.2019 · 35 citationsThe Journal of experimental medicine. 2018;215(6):1589-1608
Phenotypic deficits in the HIV-1 envelope are associated with the maturation of a V2-directed broadly neutralizing antibody lineage.29370298 · Reh, Lucia, Magnus, Carsten, Kadelka, Claus et al.2018 · 12 citationsPLoS pathogens. 2018;14(1):e1006825
Development of a high-throughput bead based assay system to measure HIV-1 specific immune signatures in clinical samples.29277486 · Liechti, Thomas, Kadelka, Claus, Ebner, Hanna et al.2018 · 18 citationsJournal of immunological methods. 2018;454:48-58
Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis.28895527 · Turk, Teja, Bachmann, Nadine, Kadelka, Claus et al.2018 · 21 citationseLife. 2017;6
Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup.28535768 · Bachmann, Nadine, Turk, Teja, Kadelka, Claus et al.2018 · 21 citationsRetrovirology. 2017;14(1):33
Delineating CD4 dependency of HIV-1: Adaptation to infect low level CD4 expressing target cells widens cellular tropism but severely impacts on envelope functionality.28264054 · Beauparlant, David, Rusert, Peter, Magnus, Carsten et al.2017 · 35 citationsPLoS pathogens. 2017;13(3):e1006255
Determinants of HIV-1 broadly neutralizing antibody induction.27668936 · Rusert, Peter, Kouyos, Roger D, Kadelka, Claus et al.2017 · 176 citationsNature medicine. 2016;22(11):1260-1267
The Influence of Canalization on the Robustness of Boolean Networks1607.04474v2 · Claus Kadelka, Jack Kuipers, Reinhard Laubenbacher2016 · 32 citationsPhysica D: Nonlinear Phenomena 353 (2017): 39-47
Career total: 103 works. 52 are in this corpus.Showing the 50 most recent.
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