Andreas Bjerregaard

0000-0003-2742-6178

cs.LGagentic AIbioinformaticsexplainable AIgene expressiongenerative modelsin silico perturbationsmachine learningModels, MolecularProteins

On Valency

published · living versions

W_yaar2ca2·v1 · currentpublished

BEND 2.0: Benchmarking the Capabilities Needed to Design DNA

with Rachael DeVries, Dionysia Danai Brilli, Panagiotis Antoniadis, Yan Li +4

1 version

Preprints & journals

5 papers in the corpus · 2025–2026

RAGenome: Scaling Retrieval-Based Genomic Language Models to Long Contexts2610.11761v1 · Frederikke Isa Marin, Panagiotis Antoniadis, Dionysia Danai Brilli et al.2026 · 0 citationsarXiv

Enhancing Generative Decoders with Stochastic Training on Biomedical Data with Missingness10.64898/2025.12.01.690409v1 · Shen, X., Bjerregaard, A., Li, Y. et al.2025 · 0 citationsbioRxiv

What Do Single-Cell Models Already Know About Perturbations?41465115 · Bjerregaard, Andreas, Prada-Luengo, Iñigo, Das, Vivek et al.2025 · 1 citationGenes. 2025;16(12)

Riemannian Generative Decoder2506.19133v3 · Andreas Bjerregaard, S\oren Hauberg, Anders Krogh2025 · 0 citationsTransactions on Machine Learning Research, 2026. ISSN 2835-8856. https://openreview.net/forum?id=vuPMXg1FDT

Foundation models of protein sequences: A brief overview.39983412 · Bjerregaard, Andreas, Groth, Peter Mørch, Hauberg, Søren et al.2025 · 16 citationsCurrent opinion in structural biology. 2025;91:103004

Career total: 5 works. 5 are in this corpus.

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