JC
Jarrod A. Chapman
Biological EvolutionEvolution, MolecularGenomeGenome, PlantSequence Analysis, DNAPhylogenyGenome, Fungalq-bio.GNadaptationAlgorithms
On Valency
published · living versionsW_26xzgw86·v1 · currentpublished
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
with Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov, Paul Baranay +86
1 version
Preprints & journals
32 papers in the corpus · 2002–2016Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei.27835948 · Morales, Jorge, Kokkori, Sofia, Weidauer, Diana et al.2017 · 44 citationsBMC evolutionary biology. 2016;16(1):247
Genome evolution in the allotetraploid frog Xenopus laevis.27762356 · Session, Adam M, Uno, Yoshinobu, Kwon, Taejoon et al.2016 · 948 citationsNature. 2016;538(7625):336-343
Meraculous2: fast accurate short-read assembly of large polymorphic genomes1608.01031v2 · Jarrod A. Chapman, Isaac Y. Ho, Eugene Goltsman et al.2016 · 11 citationsarXiv
Adaptation to heavy-metal contaminated environments proceeds via selection on pre-existing genetic variation10.1101/029900v3 · Wright, K. M., Gaudinier, A., Hellsten, U. et al.2015 · 18 citationsbioRxiv
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.25637298 · Chapman, Jarrod A, Mascher, Martin, Buluç, Aydın et al.2015 · 250 citationsGenome biology. 2015;16:26
The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.25252269 · Lowry, David B, Hernandez, Kyle, Taylor, Samuel H et al.2015 · 67 citationsThe New phytologist. 2015;205(1):402-14
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.24908277 · Wu, G Albert, Prochnik, Simon, Jenkins, Jerry et al.2014 · 698 citationsNature biotechnology. 2014;32(7):656-62
Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).23998490 · Mascher, Martin, Muehlbauer, Gary J, Rokhsar, Daniel S et al.2014 · 260 citationsThe Plant journal : for cell and molecular biology. 2013;76(4):718-27
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.23870653 · Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton et al.2014 · 671 citationsGigaScience. 2013;2(1):10
The Capsella rubella genome and the genomic consequences of rapid mating system evolution.23749190 · Slotte, Tanja, Hazzouri, Khaled M, Ågren, J Arvid et al.2013 · 428 citationsNature genetics. 2013;45(7):831-5
Insights into bilaterian evolution from three spiralian genomes.23254933 · Simakov, Oleg, Marletaz, Ferdinand, Cho, Sung-Jin et al.2013 · 666 citationsNature. 2013;493(7433):526-31
Assemblathon 1: a competitive assessment of de novo short read assembly methods.21926179 · Earl, Dent, Bradnam, Keith, St John, John et al.2012 · 507 citationsGenome research. 2011;21(12):2224-41
Meraculous: de novo genome assembly with short paired-end reads.21876754 · Chapman, Jarrod A, Ho, Isaac, Sunkara, Sirisha et al.2011 · 212 citationsPloS one. 2011;6(8):e23501
The dynamic genome of Hydra.20228792 · Chapman, Jarrod A, Kirkness, Ewen F, Simakov, Oleg et al.2010 · 810 citationsNature. 2010;464(7288):592-6
The genome of Naegleria gruberi illuminates early eukaryotic versatility.20211133 · Fritz-Laylin, Lillian K, Prochnik, Simon E, Ginger, Michael L et al.2010 · 466 citationsCell. 2010;140(5):631-42
The Sorghum bicolor genome and the diversification of grasses.19189423 · Paterson, Andrew H, Bowers, John E, Bruggmann, Rémy et al.2009 · 3,099 citationsNature. 2009;457(7229):551-6
The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome.19033196 · Sela, D A, Chapman, J, Adeuya, A et al.2009 · 884 citationsProceedings of the National Academy of Sciences of the United States of America. 2008;105(48):18964-9
Rapid whole-genome mutational profiling using next-generation sequencing technologies.18775913 · Smith, Douglas R, Quinlan, Aaron R, Peckham, Heather E et al.2008 · 260 citationsGenome research. 2008;18(10):1638-42
The Trichoplax genome and the nature of placozoans.18719581 · Srivastava, Mansi, Begovic, Emina, Chapman, Jarrod et al.2008 · 888 citationsNature. 2008;454(7207):955-60
Evolution of complex structures: minicollagens shape the cnidarian nematocyst.18676050 · David, Charles N, Ozbek, Suat, Adamczyk, Patrizia et al.2009 · 152 citationsTrends in genetics : TIG. 2008;24(9):431-8
Cilium evolution: identification of a novel protein, nematocilin, in the mechanosensory cilium of Hydra nematocytes.18635678 · Hwang, Jung Shan, Takaku, Yasuharu, Chapman, Jarrod et al.2008 · 31 citationsMolecular biology and evolution. 2008;25(9):2009-17
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.18273011 · King, Nicole, Westbrook, M Jody, Young, Susan L et al.2008 · 1,139 citationsNature. 2008;451(7180):783-8
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.17615350 · Putnam, Nicholas H, Srivastava, Mansi, Hellsten, Uffe et al.2007 · 1,555 citationsScience (New York, N.Y.). 2007;317(5834):86-94
Continuous molecular evolution of protein-domain structures by single amino acid changes.17240343 · Meier, Sebastian, Jensen, Pernille R, David, Charles N et al.2007 · 60 citationsCurrent biology : CB. 2007;17(2):173-8
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).16973872 · Tuskan, G A, Difazio, S, Jansson, S et al.2006 · 4,331 citationsScience (New York, N.Y.). 2006;313(5793):1596-604
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis.16946064 · Tyler, Brett M, Tripathy, Sucheta, Zhang, Xuemin et al.2006 · 1,069 citationsScience (New York, N.Y.). 2006;313(5791):1261-6
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.15122302 · Martinez, Diego, Larrondo, Luis F, Putnam, Nik et al.2005 · 939 citationsNature biotechnology. 2004;22(6):695-700
Community structure and metabolism through reconstruction of microbial genomes from the environment.14961025 · Tyson, Gene W, Chapman, Jarrod, Hugenholtz, Philip et al.2004 · 2,415 citationsNature. 2004;428(6978):37-43
Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing.12579582 · Pande, Vijay S, Baker, Ian, Chapman, Jarrod et al.2004 · 369 citationsBiopolymers. 2003;68(1):91-109
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.12481130 · Dehal, Paramvir, Satou, Yutaka, Campbell, Robert K et al.2002 · 1,639 citationsScience (New York, N.Y.). 2002;298(5601):2157-67
Isothermal strand-displacement amplification applications for high-throughput genomics.12523365 · Detter, John C, Jett, Jamie M, Lucas, Susan M et al.2003 · 94 citationsGenomics. 2002;80(6):691-8
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes.12142439 · Aparicio, Samuel, Chapman, Jarrod, Stupka, Elia et al.2002 · 1,591 citationsScience (New York, N.Y.). 2002;297(5585):1301-10
Career total: 71 works. 32 are in this corpus.
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