ZR
Z. Ren
astro-ph.HEcs.LGastro-ph.IMbioinformaticsgr-qcComputational Biologycs.AIhep-phPeptidesq-bio.BM
On Valency
published · living versionsW_z3paz4kv·v1 · currentpublished
Constraints on the very high energy gamma-ray emission from short GRBs with HAWC
with A. Albert, R. Alfaro, C. Alvarez, J. C. Arteaga-Velázquez +85
1 version
W_mqgxmvsn·v1published
Preprints & journals
60 papers in the corpus · 2015–2026Artificial intelligence-enabled induced-proximity drug discovery: Designing productive molecular associations.42705572 · Wu, Haomin, Xu, Yaxin, Nie, Zhiwei et al.2026 · 0 citationsDrug discovery today. 2026;31(6):104796
A Multitask Large Reasoning Model for Molecular Science.42679201 · Liu, Pengfei, Ge, Shuang, Wang, Xiaobo et al.2026 · 0 citationsThe journal of physical chemistry letters. 2026;17(34):9831-9843
The limits of bio-molecular modeling with large language models: a cross-scale evaluation.42494109 · Xu, Yaxin, Zhou, Yue, Zhao, Tianyu et al.2026 · 0 citationsBioinformatics (Oxford, England). 2026;42(8)
Improving Variant Effect Prediction by Steering Sparse Mechanistic Features in Protein Language Models10.64898/2026.05.12.724472v1 · Wang, M., Yuan, M., Vasilakos, A. V. et al.2026 · 0 citationsbioRxiv
Pseudodata-Guided Invariant Representation Learning Boosts the Out-of-Distribution Generalization in Enzymatic Kinetic Parameter Prediction.42037561 · Wu, Haomin, Nie, Zhiwei, Zhang, Hongyu et al.2026 · 0 citationsJournal of chemical information and modeling. 2026;66(9):5068-5077
PROTOTYPE-BASED CONTINUAL CELL-TYPE ANNOTATION REVEALS CELLULAR STATE TRANSITIONS IN EXPANDING SINGLE-CELL ATLASES10.64898/2026.03.05.709973v2 · Ge, S., He, Q., Ren, Y. et al.2026 · 1 citationbioRxiv
Few-Shot Generalization to Novel Compounds in Single-Cell Drug Response via Graph-Infused Meta-Pretraining.41171687 · Ge, Shuang, Ren, Yiming, Xu, Huan et al.2025 · 0 citationsIEEE transactions on computational biology and bioinformatics. 2025;22(6):3438-3449
A Unified Peptide Generative Framework via a Weakly Order-Dependent Autoregressive Language Model and Lifelong Learning.40748290 · Nie, Zhiwei, Li, Daixi, Liu, Yutian et al.2025 · 1 citationJournal of chemical information and modeling. 2025;65(15):7919-7935
Predicting protein stability changes upon mutations with dual-view ensemble learning from single sequence.40641045 · Nie, Zhiwei, Ma, Yiming, Liu, Yutian et al.2025 · 6 citationsBriefings in bioinformatics. 2025;26(4)
Generative prediction of real-world prevalent SARS-CoV-2 mutation with in silico virus evolution.40532108 · Liu, Xudong, Nie, Zhiwei, Si, Haorui et al.2025 · 12 citationsBriefings in bioinformatics. 2025;26(3)
Deep learning in single-cell and spatial transcriptomics data analysis: advances and challenges from a data science perspective.40185158 · Ge, Shuang, Sun, Shuqing, Xu, Huan et al.2025 · 81 citationsBriefings in bioinformatics. 2025;26(2)
Discovery of Bioactive Constituents for Colitis From Traditional Chinese Medicine Prescription via Deep Neural Network.40811203 · Ren, Zhixiang, Ren, Yiming, Liu, Pengfei et al.2025 · 2 citationsIEEE transactions on computational biology and bioinformatics. 2025;22(2):946-955
Compact Binary Coalescence Gravitational Wave Signals Counting and Separation2412.18259v2 · Tianyu Zhao, Yue Zhou, Ruijun Shi et al.2024 · 4 citationsPhys. Rev. D 111, 104028 (2025)
Rapid eccentric spin-aligned binary black hole waveform generation based on deep learning2411.14893v1 · Ruijun Shi, Yue Zhou, Tianyu Zhao et al.2024 · 11 citationsarXiv
A Multi-Modal Genomic Knowledge Distillation Framework for Drug Response Prediction10.1101/2024.10.17.618828v1 · Ge, S., Sun, S., Xu, H. et al.2024 · 2 citationsbioRxiv
CELA-MFP: a contrast-enhanced and label-adaptive framework for multi-functional therapeutic peptides prediction.39038935 · Fang, Yitian, Luo, Mingshuang, Ren, Zhixiang et al.2024 · 22 citationsBriefings in bioinformatics. 2024;25(4)
SCREP: Towards Single-Cell Drug Response Prediction by Pharmacogenomic Embedding Enhanced Meta-Pretraining and Few-Shot Transfer Learning10.1101/2024.04.25.591050v2 · Ge, S., Sun, S., Ren, Y. et al.2024 · 0 citationsbioRxiv
A Self-feedback Knowledge Elicitation Approach for Chemical Reaction Predictions2404.09606v1 · Pengfei Liu, Jun Tao, Zhixiang Ren2024 · 1 citationarXiv
TCMM: A unified database for traditional Chinese medicine modernization and therapeutic innovations.38680873 · Ren, Zhixiang, Ren, Yiming, Li, Zeting et al.2024 · 21 citationsComputational and structural biotechnology journal. 2024;23:1619-1630
Self-supervised learning on millions of primary RNA sequences from 72 vertebrates improves sequence-based RNA splicing prediction.38605640 · Chen, Ken, Zhou, Yue, Ding, Maolin et al.2024 · 74 citationsBriefings in bioinformatics. 2024;25(3)
Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey2402.07249v3 · Taojie Kuang, Pengfei Liu, Zhixiang Ren2024 · 20 citationsarXiv
A quantitative analysis of knowledge-learning preferences in large language models in molecular science2402.04119v2 · Pengfei Liu, Jun Tao, Zhixiang Ren2024 · 14 citationsarXiv
Cytokine expression patterns: A single-cell RNA sequencing and machine learning based roadmap for cancer classification.38335854 · Ren, Zhixiang, Ren, Yiming, Liu, Pengfei et al.2024 · 6 citationsComputational biology and chemistry. 2024;109:108025
GWAI: Artificial Intelligence Platform for Enhanced Gravitational Wave Data Analysis2402.02825v2 · Tianyu Zhao, Yue Zhou, Ruijun Shi et al.2024 · 1 citationSoftwareX 28, 101930 (2024)
GIT-Mol: A multi-modal large language model for molecular science with graph, image, and text.38359660 · Liu, Pengfei, Ren, Yiming, Tao, Jun et al.2024 · 91 citationsComputers in biology and medicine. 2024;171:108073
DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model.38015872 · Fang, Yitian, Jiang, Yi, Wei, Leyi et al.2023 · 100 citationsBioinformatics (Oxford, England). 2023;39(12)
Dawning of a New Era in Gravitational Wave Data Analysis: Unveiling Cosmic Mysteries via Artificial Intelligence -- A Systematic Review2311.15585v2 · Tianyu Zhao, Ruijun Shi, Yue Zhou et al.2023 · 12 citationsFront. Phys. 20, 045301 (2025)
Compact Binary Systems Waveform Generation with Generative Pre-trained Transformer2310.20172v3 · Ruijun Shi, Yue Zhou, Tianyu Zhao et al.2023 · 0 citationsarXiv
3D-Mol: A Novel Contrastive Learning Framework for Molecular Property Prediction with 3D Information2309.17366v3 · Taojie Kuang, Yiming Ren, Zhixiang Ren2023 · 19 citationsarXiv
Dilated convolutional neural network for detecting extreme-mass-ratio inspirals2308.16422v3 · Tianyu Zhao, Yue Zhou, Ruijun Shi et al.2023 · 16 citationsPhys. Rev. D 109, 084054 (2024)
Identification of bioactive constituents for colitis from traditional Chinese medicine prescription via deep neural network10.1101/2023.05.31.542690v1 · Ren, Z., Ren, Y., Liu, P. et al.2023 · 0 citationsbioRxiv
A Large-Scale Dataset of Three-Dimensional Solar Magnetic Fields Extrapolated by Nonlinear Force-Free Method.36997553 · Zhao, Zhongrui, Xu, Long, Zhu, Xiaoshuai et al.2023 · 8 citationsScientific data. 2023;10(1):178
Self-supervised learning on millions of pre-mRNA sequences improves sequence-based RNA splicing prediction10.1101/2023.01.31.526427v2 · Chen, K., Zhou, Y., Ding, M. et al.2023 · 32 citationsbioRxiv
Taiji Data Challenge for Exploring Gravitational Wave Universe2301.02967v2 · Zhixiang Ren, Tianyu Zhao, Zhoujian Cao et al.2023 · 46 citationsFront. Phys. 18, 64302 (2023)
WaveFormer: transformer-based denoising method for gravitational-wave data2212.14283v2 · He Wang, Yue Zhou, Zhoujian Cao et al.2022 · 22 citationsarXiv
Running ahead of evolution - AI based simulation for predicting future high-risk SARS-CoV-2 variants10.1101/2022.11.17.516989v4 · Chen, J., Nie, Z., Wang, Y. et al.2022 · 13 citationsbioRxiv
MLGWSC-1: The first Machine Learning Gravitational-Wave Search Mock Data Challenge2209.11146v1 · Marlin B. Schafer, Ondrej Zelenka, Alexander H. Nitz et al.2022 · 64 citationsarXiv
Constraints on the very high energy gamma-ray emission from short GRBs with HAWC2208.01075v1 · A. Albert, R. Alfaro, C. Alvarez et al.2022 · 5 citationsarXivon Valency
Space-based gravitational wave signal detection and extraction with deep neural network2207.07414v3 · Tianyu Zhao, Ruoxi Lyu, He Wang et al.2022 · 35 citationsCommun Phys 6, 212 (2023)
AIPerf: Automated machine learning as an AI-HPC benchmark2008.07141v7 · Zhixiang Ren, Yongheng Liu, Tianhui Shi et al.2020 · 33 citationsarXiv
3HWC: The Third HAWC Catalog of Very-High-Energy Gamma-ray Sources2007.08582v3 · A. Albert, R. Alfaro, C. Alvarez et al.2020 · 217 citations2020 ApJ 905 76
Multiple Galactic Sources with Emission Above 56 TeV Detected by HAWC.32004015 · Abeysekara, A U, Albert, A, Alfaro, R et al.2020 · 228 citationsPhysical review letters. 2020;124(2):021102
Measurement of the Crab Nebula Spectrum Past 100 TeV with HAWC1905.12518v3 · A.U. Abeysekara, A. Albert, R. Alfaro et al.2019 · 186 citationsThe Astrophysical Journal, Volume 881, Number 2 (2019)
MAGIC and Fermi-LAT gamma-ray results on unassociated HAWC sources1901.03982v1 · M. L. Ahnen, S. Ansoldi, L. A. Antonelli et al.2019 · 10 citationsMonthly Notices of the Royal Astronomical Society, Volume 485, Issue 1, May 2019, Pages 356-366
All-Sky Measurement of the Anisotropy of Cosmic Rays at 10 TeV and Mapping of the Local Interstellar Magnetic Field1812.05682v3 · A.U. Abeysekara, R. Alfaro, C. Alvarez et al.2018 · 84 citationsApJ, 871, (2019) 96
Very-high-energy particle acceleration powered by the jets of the microquasar SS 433.30283106 · Abeysekara, A U, Albert, A, Alfaro, R et al.2019 · 152 citationsNature. 2018;562(7725):82-85
VERITAS and Fermi-LAT observations of new HAWC sources1808.10423v1 · A. U. Abeysekara, A. Archer, W. Benbow et al.2018 · 39 citationsApJ 866 (2018) no.1, 24
First HAWC Observations of the Sun Constrain Steady TeV Gamma-Ray Emission1808.05620v2 · A. Albert, R. Alfaro, C. Alvarez et al.2018 · 32 citationsPhys. Rev. D 98, 123011 (2018)
Constraints on Spin-Dependent Dark Matter Scattering with Long-Lived Mediators from TeV Observations of the Sun with HAWC1808.05624v3 · A. Albert, R. Alfaro, C. Alvarez et al.2018 · 57 citationsPhys. Rev. D 98, 123012 (2018)
Observation of Anisotropy of TeV Cosmic Rays with Two Years of HAWC1805.01847v3 · A.U. Abeysekara, R. Alfaro, C. Alvarez et al.2018 · 50 citationsarXiv
Career total: 78 works. 60 are in this corpus.Showing the 50 most recent.
Profile built from the corpus for this byline.
Author records are still filling in while the Hub is in alpha. If this is your page, you'll be able to claim it soon. Spot a mistake? Tell us.