WO
William Ott
math.DSGene Regulatory Networksphysics.soc-phbiophysicsq-bio.MNq-bio.QMsynthetic biologyGene Expression Regulation, Bacterialmath.MPmath-ph
On Valency
published · living versionsW_44df8v5g·v1 · currentpublished
Gromov-Hausdorff versus Hausdorff distances for Euclidean submanifolds with positive reach
with Prasanna Brahme
1 version
Preprints & journals
36 papers in the corpus · 2008–2025DISTRIBUTED DELAY STABILIZES BISTABLE GENETIC NETWORKS.41479452 · Campbell, Sean, White, Courtney C, Alexander, Amanda M et al.2026 · 0 citationsArXiv. 2025
Attractor learning for spatiotemporally chaotic dynamical systems using echo state networks with transfer learning2505.24099v2 · Mohammad Shah Alam, William Ott, Ilya Timofeyev2025 · 2 citationsarXiv
Noisy Delay Denoises Biochemical Oscillators.38427894 · Song, Yun Min, Campbell, Sean, Shiau, LieJune et al.2024 · 13 citationsPhysical review letters. 2024;132(7):078402
Tunable Dynamics in a Multistrain Transcriptional Pulse Generator.38016068 · Zong, David M, Sadeghpour, Mehdi, Molinari, Sara et al.2023 · 8 citationsACS synthetic biology. 2023;12(12):3531-3543
Impact of correlated information on pioneering decisions.39886359 · Stickler, Megan, Ott, William, Kilpatrick, Zachary P et al.2025 · 3 citationsPhysical review research. 2023;5(3)
Correlated Information Reduces Accuracy of Pioneering Decision-Makers2304.01078v1 · Megan Stickler, William Ott, Zachary P. Kilpatrick et al.2023 · 0 citationsarXiv
Signaling in microbial communities with open boundaries.36711825 · Winkle, James J, Saha, Soutick, Essman, Joseph et al.2024 · 1 citationbioRxiv : the preprint server for biology. 2023
Delay-induced uncertainty in the glucose-insulin system: Pathogenicity for obesity and type-2 diabetes mellitus.36117719 · Karamched, Bhargav R, Hripcsak, George, Leibel, Rudolph L et al.2024 · 7 citationsFrontiers in physiology. 2022;13:936101
Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia.34550968 · Winkle, James J, Karamched, Bhargav R, Bennett, Matthew R et al.2021 · 23 citationsPLoS computational biology. 2021;17(9):e1009381
Efficient Evader Detection in Mobile Sensor Networks2101.09813v2 · Henry Adams, Deepjyoti Ghosh, Clark Mask et al.2021 · 2 citationsarXiv
A kinetic theory approach for 2D crowd dynamics with emotional contagion2012.08108v2 · Daewa Kim, Kaylie O'Connell, William Ott et al.2020 · 31 citationsarXiv
Heterogeneity Improves Speed and Accuracy in Social Networks.33274999 · Karamched, Bhargav, Stickler, Megan, Ott, William et al.2020 · 35 citationsPhysical review letters. 2020;125(21):218302
Majority sensing in synthetic microbial consortia.32694598 · Alnahhas, Razan N, Sadeghpour, Mehdi, Chen, Ye et al.2020 · 90 citationsNature communications. 2020;11(1):3659
Delay-Induced Uncertainty in Physiological Systems10.1101/2020.07.17.209544v1 · Karamched, B. R., Albers, D., Hripcsak, G. et al.2020 · 2 citationsbioRxiv
Bayesian inference of distributed time delay in transcriptional and translational regulation.31347688 · Choi, Boseung, Cheng, Yu-Yu, Cinar, Selahattin et al.2020 · 24 citationsBioinformatics (Oxford, England). 2020;36(2):586-593
Spatiotemporal Dynamics of Synthetic Microbial Consortia in Microfluidic Devices.31361464 · Alnahhas, Razan N, Winkle, James J, Hirning, Andrew J et al.2020 · 50 citationsACS synthetic biology. 2019;8(9):2051-2058
Moran Model of Spatial Alignment in Microbial Colonies.31889737 · Karamched, B R, Ott, W, Timofeyev, I et al.2023 · 15 citationsPhysica D. Nonlinear phenomena. 2019;395:1-6
Nonstationary open dynamical systems1808.05315v5 · Brett Geiger, William Ott2018 · 2 citationsarXiv
Predicting Transcriptional Output of Synthetic Multi-input Promoters.30040895 · Zong, David M, Cinar, Selahittin, Shis, David L et al.2019 · 20 citationsACS synthetic biology. 2018;7(8):1834-1843
Stochastic and Coarse-Grained Two-Dimensional Modeling of Directional Particle Movement1806.01365v2 · William Ott, Ilya Timofeyev, Thomas Weber2018 · 1 citationPhysica D: Nonlinear Phenomena, 2019
Boundary-Driven Emergent Spatiotemporal Order in Growing Microbial Colonies10.1101/328583v1 · Karamched, B., Ott, W., Timofeyev, I. et al.2018 · 0 citationsbioRxiv
Tuning the dynamic range of bacterial promoters regulated by ligand-inducible transcription factors.29302024 · Chen, Ye, Ho, Joanne M L, Shis, David L et al.2018 · 174 citationsNature communications. 2018;9(1):64
Modeling mechanical interactions in growing populations of rod-shaped bacteria.28649958 · Winkle, James J, Igoshin, Oleg A, Bennett, Matthew R et al.2017 · 30 citationsPhysical biology. 2017;14(5):055001
Large deviations for Gaussian diffusions with delay1610.08769v3 · Robert Azencott, Brett Geiger, William Ott2016 · 6 citationsJournal of Statistical Physics, 2017
OBSERVING LYAPUNOV EXPONENTS OF INFINITE-DIMENSIONAL DYNAMICAL SYSTEMS.28066028 · Ott, William, Rivas, Mauricio A, West, James2020 · 2 citationsJournal of statistical physics. 2015;161(5):1098-1111
Timing and Variability of Galactose Metabolic Gene Activation Depend on the Rate of Environmental Change.26200924 · Nguyen-Huu, Truong D, Gupta, Chinmaya, Ma, Bo et al.2016 · 9 citationsPLoS computational biology. 2015;11(7):e1004399
A scale-free method for testing the proportionality of branch lengths between two phylogenetic trees1503.04120v1 · Yichen Zheng, William Ott, Chinmaya Gupta et al.2015 · 0 citationsarXiv
Modeling delay in genetic networks: from delay birth-death processes to delay stochastic differential equations.24880267 · Gupta, Chinmaya, López, José Manuel, Azencott, Robert et al.2015 · 27 citationsThe Journal of chemical physics. 2014;140(20):204108
Engineered temperature compensation in a synthetic genetic clock.24395809 · Hussain, Faiza, Gupta, Chinmaya, Hirning, Andrew J et al.2014 · 69 citationsProceedings of the National Academy of Sciences of the United States of America. 2014;111(3):972-7
Transcriptional delay stabilizes bistable gene networks.23952450 · Gupta, Chinmaya, López, José Manuel, Ott, William et al.2013 · 61 citationsPhysical review letters. 2013;111(5):058104
Memory loss for time-dependent dynamical systems1210.0109v1 · William Ott, Lai-Sang Young, Mikko Stenlund2012 · 48 citationsMathematical Research Letters, Volume 16 (2009), Number 3, pages 463-475
One-sided shift spaces over infinite alphabets1209.1760v3 · William Ott, Mark Tomforde, Paulette Willis2012 · 15 citationsarXiv
Stochastic delay accelerates signaling in gene networks.22102802 · Josić, Krešimir, López, José Manuel, Ott, William et al.2012 · 88 citationsPLoS computational biology. 2011;7(11):e1002264
From limit cycles to strange attractors1004.0019v1 · William Ott, Mikko Stenlund2010 · 30 citationsCommun. Math. Phys. 296, 215-249 (2010)
When Lyapunov exponents fail to exist.19113196 · Ott, William, Yorke, James A2009 · 55 citationsPhysical review. E, Statistical, nonlinear, and soft matter physics. 2008;78(5 Pt 2):056203
Dissipative homoclinic loops and rank one chaos0802.4283v2 · Qiudong Wang, William Ott2008 · 19 citationsarXiv
Career total: 60 works. 36 are in this corpus.
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