FS
Francesco Strino
AlgorithmsbioinformaticsChromatin ImmunoprecipitationGene Expression RegulationSequence Analysis, RNASingle-Cell AnalysisAccessible chromatinBiomarkerscartelsChIP-seq
On Valency
published · living versionsW_a2h87auj·v1 · currentpublished
Blind Noise Equalization for Large Data Matrices under General Variance Profiles
with Boris Landa, Fabio Parisi, Ruiqi Li, Yuval Kluger
1 version
Preprints & journals
24 papers in the corpus · 2005–2026A spatial multi-omics atlas of immunosenescence reveals germinal-center B cell dysfunction in human lymph nodes.42519544 · Farzad, Negin, Enninful, Archibald, Lu, Yao et al.2026 · 2 citationsCell press blue. 2026;1(4)
Locat: Joint enrichment and depletion testing identifies localized marker genes in single-cell transcriptomics.41993378 · Lewis, Wesley, Aizenbud, Yariv, Strino, Francesco et al.2026 · 0 citationsbioRxiv : the preprint server for biology. 2026
Human Lymph Node Cellular Senescence Atlas Reveals Age-Dependent Alteration in Germinal Center B Cell Function and Niches.41993351 · Farzad, Negin, Enninful, Archibald, Lu, Yao et al.2026 · 1 citationbioRxiv : the preprint server for biology. 2026
Immunometabolic resistors of aging in long-lived golden spiny mice.41739938 · Kim, Hee-Hoon, Sagiv-Zangi, Tali, Youm, Yun-Hee et al.2026 · 1 citationScience advances. 2026;12(9):eaec9991
LMD: Cluster-Independent Multiscale Marker Identification in Single-cell RNA-seq Data.38014159 · Li, Ruiqi, Qu, Rihao, Parisi, Fabio et al.2025 · 1 citationbioRxiv : the preprint server for biology. 2024
Gene trajectory inference for single-cell data by optimal transport metrics.38580861 · Qu, Rihao, Cheng, Xiuyuan, Sefik, Esen et al.2025 · 50 citationsNature biotechnology. 2025;43(2):258-268
Identifying peaks in *-seq data using shape information.27295177 · Strino, Francesco, Lappe, Michael2017 · 18 citationsBMC bioinformatics. 2016;17 Suppl 5:206
Comparative FAIRE-seq analysis reveals distinguishing features of the chromatin structure of ground state- and primed-pluripotent cells.25335464 · Murtha, Matthew, Strino, Francesco, Tokcaer-Keskin, Zeynep et al.2015 · 22 citationsStem cells (Dayton, Ohio). 2015;33(2):378-91
FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells.24658142 · Murtha, Matthew, Tokcaer-Keskin, Zeynep, Tang, Zuojian et al.2014 · 93 citationsNature methods. 2014;11(5):559-65
Ranking and combining multiple predictors without labeled data.24474744 · Parisi, Fabio, Strino, Francesco, Nadler, Boaz et al.2014 · 119 citationsProceedings of the National Academy of Sciences of the United States of America. 2014;111(4):1253-8
TrAp: a tree approach for fingerprinting subclonal tumor composition.23892400 · Strino, Francesco, Parisi, Fabio, Micsinai, Mariann et al.2013 · 125 citationsNucleic acids research. 2013;41(17):e165
Arpeggio: harmonic compression of ChIP-seq data reveals protein-chromatin interaction signatures.23873955 · Stanton, Kelly Patrick, Parisi, Fabio, Strino, Francesco et al.2013 · 7 citationsNucleic acids research. 2013;41(16):e161
SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors.23592795 · Zhang, Jin, Bonasio, Roberto, Strino, Francesco et al.2013 · 82 citationsGenes & development. 2013;27(7):749-66
Integrated analysis of tumor samples sheds light on tumor heterogeneity.23012583 · Parisi, Fabio, Micsinai, Mariann, Strino, Francesco et al.2013 · 23 citationsThe Yale journal of biology and medicine. 2012;85(3):347-61
Close proximity to Igh is a contributing factor to AID-mediated translocations.22864115 · Rocha, Pedro P, Micsinai, Mariann, Kim, JungHyun Rachel et al.2012 · 63 citationsMolecular cell. 2012;47(6):873-85
IL-7 functionally segregates the pro-B cell stage by regulating transcription of recombination mediators across cell cycle.22581861 · Johnson, Kristen, Chaumeil, Julie, Micsinai, Mariann et al.2012 · 41 citationsJournal of immunology (Baltimore, Md. : 1950). 2012;188(12):6084-92
PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes.22325352 · Gao, Zhonghua, Zhang, Jin, Bonasio, Roberto et al.2012 · 850 citationsMolecular cell. 2012;45(3):344-56
Picking ChIP-seq peak detectors for analyzing chromatin modification experiments.22307239 · Micsinai, Mariann, Parisi, Fabio, Strino, Francesco et al.2012 · 66 citationsNucleic acids research. 2012;40(9):e70
VDA, a method of choosing a better algorithm with fewer validations.22046256 · Strino, Francesco, Parisi, Fabio, Kluger, Yuval2012 · 4 citationsPloS one. 2011;6(10):e26074
Selenoglycosides in silico: ab initio-derived reparameterization of MM4, conformational analysis using histo-blood group ABH antigens and lectin docking as indication for potential of bioactivity.20976527 · Strino, Francesco, Lii, Jenn-Huei, Koppisetty, Chaitanya A K et al.2011 · 14 citationsJournal of computer-aided molecular design. 2010;24(12):1009-21
Computational studies on the interaction of ABO-active saccharides with the norovirus VA387 capsid protein can explain experimental binding data.20407802 · Koppisetty, Chaitanya A K, Nasir, Waqas, Strino, Francesco et al.2010 · 16 citationsJournal of computer-aided molecular design. 2010;24(5):423-31
Conformational analysis of thioglycoside derivatives of histo-blood group ABH antigens using an ab initio-derived reparameterization of MM4: implications for design of non-hydrolysable mimetics.19757090 · Strino, Francesco, Lii, Jenn-Huei, Gabius, Hans-Joachim et al.2010 · 14 citationsJournal of computer-aided molecular design. 2009;23(12):845-52
Conformation of the exopolysaccharide of Burkholderia cepacia predicted with molecular mechanics (MM3) using genetic algorithm search.15780266 · Strino, Francesco, Nahmany, Abraham, Rosen, Jimmy et al.2005 · 19 citationsCarbohydrate research. 2005;340(5):1019-24
The use of a genetic algorithm search for molecular mechanics (MM3)-based conformational analysis of oligosaccharides.15780270 · Nahmany, Abraham, Strino, Francesco, Rosen, Jimmy et al.2005 · 26 citationsCarbohydrate research. 2005;340(5):1059-64
Career total: 31 works. 24 are in this corpus.
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