WM
Wei-Ying Ma
cs.LGcs.AIq-bio.BMcs.CVArtificial Intelligencebioinformaticscs.CLphysics.chem-phq-bio.QMAI Twins
On Valency
published · living versionsW_8hf6h7cw·v1 · currentpublished
SEEK: Skill Extraction with Evolving Knowledge against Frontier Science Agents
with Cheng Gui, Xiang Zheng, Yutao Wu, Hanxun Huang +3
1 version
W_2hw8t7gk·v1published
Preprints & journals
41 papers in the corpus · 2000–2026Author Correction: Peptide design through binding interface mimicry with PepMimic.41145876 · Kong, Xiangzhe, Jiao, Rui, Lin, Haowei et al.2026 · 0 citationsNature biomedical engineering. 2026;10(7):1501
AMix-2: Establishing Protein as a Native Modality in Large Language Models2605.30963v1 · Keyue Qiu, Yixin Wu, Lihao Wang et al.2026 · 0 citationsarXiv
Deep contrastive learning enables genome-wide virtual screening.41505557 · Jia, Yinjun, Gao, Bowen, Tan, Jiaxin et al.2026 · 64 citationsScience (New York, N.Y.). 2026;391(6781):eads9530
Peptide design through binding interface mimicry with PepMimic.41034517 · Kong, Xiangzhe, Jiao, Rui, Lin, Haowei et al.2026 · 30 citationsNature biomedical engineering. 2026;10(7):1295-1310
AANet: Virtual Screening under Structural Uncertainty via Alignment and Aggregation2506.05768v2 · Wenyu Zhu, Jianhui Wang, Bowen Gao et al.2025 · 0 citationsarXiv
Manipulating 3D Molecules in a Fixed-Dimensional E(3)-Equivariant Latent Space2506.00771v2 · Zitao Chen, Yinjun Jia, Zitong Tian et al.2025 · 0 citationsarXiv
Piloting Structure-Based Drug Design via Modality-Specific Optimal Schedule2505.07286v2 · Keyue Qiu, Yuxuan Song, Zhehuan Fan et al.2025 · 0 citationsarXiv
Straight-Line Diffusion Model for Efficient 3D Molecular Generation2503.02918v2 · Yuyan Ni, Shikun Feng, Haohan Chi et al.2025 · 0 citationsarXiv
Steering Protein Family Design through Profile Bayesian Flow2502.07671v2 · Jingjing Gong, Yu Pei, Siyu Long et al.2025 · 1 citationarXiv
A Periodic Bayesian Flow for Material Generation2502.02016v1 · Hanlin Wu, Yuxuan Song, Jingjing Gong et al.2025 · 2 citationsarXiv
Artificial intelligence without restriction surpassing human intelligence with probability one: Theoretical insight into secrets of the brain with AI twins of the brain.41312528 · Huang, Guang-Bin, Westover, M Brandon, Tan, Eng-King et al.2026 · 7 citationsNeurocomputing. 2025;619
ACDiT: Interpolating Autoregressive Conditional Modeling and Diffusion Transformer2412.07720v3 · Jinyi Hu, Shengding Hu, Yuxuan Song et al.2024 · 0 citationsarXiv
Generative AI-Powered Inverse Design for TailoredNarrowband Molecular Emitters10.26434/chemrxiv-2024-f123c-v2 · Mianzhi Pan, Tianhao Tan, Yawen Ouyang et al.2024 · 1 citationChemRxiv
Empower Structure-Based Molecule Optimization with Gradient Guided Bayesian Flow Networks2411.13280v4 · Keyue Qiu, Yuxuan Song, Jie Yu et al.2024 · 3 citationsarXiv
UniGEM: A Unified Approach to Generation and Property Prediction for Molecules2410.10516v3 · Shikun Feng, Yuyan Ni, Yan Lu et al.2024 · 3 citationsarXiv
Pre-training with Fractional Denoising to Enhance Molecular Property Prediction2407.11086v1 · Yuyan Ni, Shikun Feng, Xin Hong et al.2024 · 32 citationsarXiv
From Theory to Therapy: Reframing SBDD Model Evaluation via Practical Metrics2406.08980v1 · Bowen Gao, Haichuan Tan, Yanwen Huang et al.2024 · 0 citationsarXiv
UniCorn: A Unified Contrastive Learning Approach for Multi-view Molecular Representation Learning2405.10343v1 · Shikun Feng, Yuyan Ni, Minghao Li et al.2024 · 0 citationsarXiv
MolCRAFT: Structure-Based Drug Design in Continuous Parameter Space2404.12141v4 · Yanru Qu, Keyue Qiu, Yuxuan Song et al.2024 · 12 citationsarXiv
MOL-AE: Auto-Encoder Based Molecular Representation Learning With 3D Cloze Test Objective10.1101/2024.04.13.589331v2 · Yang, J., Zheng, K., Long, S. et al.2024 · 10 citationsbioRxiv
Unified Generative Modeling of 3D Molecules via Bayesian Flow Networks2403.15441v1 · Yuxuan Song, Jingjing Gong, Yanru Qu et al.2024 · 3 citationsarXiv
ESM All-Atom: Multi-scale Protein Language Model for Unified Molecular Modeling2403.12995v4 · Kangjie Zheng (equal contribution), Siyu Long (equal contribution), Tianyu Lu et al.2024 · 12 citationsarXiv
Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion2403.12987v1 · Bowen Gao, Minsi Ren, Yuyan Ni et al.2024 · 2 citationsarXiv
Contextual Molecule Representation Learning from Chemical Reaction Knowledge2402.13779v1 · Han Tang, Shikun Feng, Bicheng Lin et al.2024 · 0 citationsarXiv
Equivariant Flow Matching with Hybrid Probability Transport2312.07168v1 · Yuxuan Song, Jingjing Gong, Minkai Xu et al.2023 · 2 citationsarXiv
RetroDiff: Retrosynthesis as Multi-stage Distribution Interpolation2311.14077v2 · Yiming Wang, Yuxuan Song, Yiqun Wang et al.2023 · 1 citationarXiv
Sliced Denoising: A Physics-Informed Molecular Pre-Training Method2311.02124v1 · Yuyan Ni, Shikun Feng, Wei-Ying Ma et al.2023 · 0 citationsarXiv
Fractional Denoising for 3D Molecular Pre-training2307.10683v3 · Shikun Feng, Yuyan Ni, Yanyan Lan et al.2023 · 3 citationsarXiv
PEMP: Leveraging Physics Properties to Enhance Molecular Property Prediction2211.01978v1 · Yuancheng Sun, Yimeng Chen, Weizhi Ma et al.2022 · 7 citationsarXiv
Controllable Person Image Synthesis with Attribute-Decomposed GAN2003.12267v4 · Yifang Men, Yiming Mao, Yuning Jiang et al.2020 · 267 citationsarXiv
Effective Domain Knowledge Transfer with Soft Fine-tuning1909.02236v1 · Zhichen Zhao, Bowen Zhang, Yuning Jiang et al.2019 · 1 citationarXiv
UniVSE: Robust Visual Semantic Embeddings via Structured Semantic Representations1904.05521v2 · Hao Wu, Jiayuan Mao, Yufeng Zhang et al.2019 · 2 citationsarXiv
Automatic Dataset Augmentation1708.08201v2 · Yalong Bai, Kuiyuan Yang, Tao Mei et al.2017 · 1 citationarXiv
Dual Learning for Machine Translation1611.00179v1 · Yingce Xia, Di He, Tao Qin et al.2016 · 640 citationsNIPS 2016
Topic Aware Neural Response Generation1606.08340v2 · Chen Xing, Wei Wu, Yu Wu et al.2016 · 448 citationsarXiv
LightLDA: Big Topic Models on Modest Compute Clusters1412.1576v1 · Jinhui Yuan, Fei Gao, Qirong Ho et al.2014 · 12 citationsarXiv
Learning High-level Image Representation for Image Retrieval via Multi-Task DNN using Clickthrough Data1312.4740v2 · Yalong Bai, Kuiyuan Yang, Wei Yu et al.2013 · 10 citationsarXiv
Flickr distance: a relationship measure for visual concepts.21987557 · Wu, Lei, Hua, Xian-Sheng, Yu, Nenghai et al.2012 · 45 citationsIEEE transactions on pattern analysis and machine intelligence. 2012;34(5):863-75
Annotating images by mining image search results.18787241 · Wang, Xin-Jing, Zhang, Lei, Li, Xirong et al.2009 · 194 citationsIEEE transactions on pattern analysis and machine intelligence. 2008;30(11):1919-32
Learning similarity measure for natural image retrieval with relevance feedback.18244477 · Guo, Guo-Dong, Jain, A K, Ma, Wei-Ying et al.2012 · 226 citationsIEEE transactions on neural networks. 2002;13(4):811-20
EdgeFlow: a technique for boundary detection and image segmentation.18262975 · Ma, W Y, Manjunath, B S2012 · 354 citationsIEEE transactions on image processing : a publication of the IEEE Signal Processing Society. 2000;9(8):1375-88
Career total: 421 works. 41 are in this corpus.
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