EY
Eitan Yaakobi
cs.ITmath.ITmath.COcs.DMDNAbioinformaticscs.DScs.NISoftwareAlgorithms
On Valency
published · living versionsW_th26uef7·v1 · currentpublished
Making Every Edit Count: Efficient Binary Edit Correction at the Gilbert-Varshamov Bound
with Ryan Gabrys, Shubhransh Singhvi
1 version
Preprints & journals
158 papers in the corpus · 2007–2026On the Average List Size of VT Codes under Two Insertions or Two Deletions2610.15767v1 · Anisha Banerjee, Roni Con, Antonia Wachter-Zeh et al.2026 · 0 citationsarXiv
Sequential Random Sampling PIR with Multiple Colluding Servers in DNA-Based Data Storage2610.10211v1 · Chen Wang, Natalia Silberstein, Eitan Yaakobi2026 · 0 citationsarXiv
Optimal Codes for the Coverage Depth Problem and the Performance of Random Codes2610.07370v1 · Roee Gross, Yitzchak Grunbaum, Matteo Bertuzzo et al.2026 · 0 citationsarXiv
More on Codes for Combinatorial Composite DNA2608.08018v1 · Zuo Ye, Omer Sabary, Ryan Gabrys et al.2026 · 3 citationsarXiv
NinjaSeq: programmable restriction enzyme-based sequencing library preparation with random access for DNA data storage10.64898/2026.06.11.730843v1 · Galminas, I., Sabary, O., Abraham, H. et al.2026 · 0 citationsbioRxiv
Sequence Reconstruction for Substitution Channel: New Sufficient Conditions and Algorithms2606.05454v1 · Chen Wang, Eitan Yaakobi, Yiwei Zhang2026 · 0 citationsarXiv
Rank Modulated Composite Encoding for Data Storage in DNA2606.00978v1 · Tomer Cohen, Zhiying Wang, Eitan Yaakobi et al.2026 · 1 citationarXiv
Bounds on Multiple -Burst Deletion-Correcting Codes2606.01245v2 · Chen Wang, Xiangliang Kong, Eitan Yaakobi et al.2026 · 1 citationarXiv
Correcting Tail Deletions in Rank Modulated Composite Encoding for Data Storage in DNA2605.19148v2 · Tomer Cohen, Eitan Yaakobi, Zohar Yakhini2026 · 0 citationsarXiv
Random Access Expectation in DNA Storage and Fountain Codes2605.10919v2 · Christoph Hofmeister, Rawad Bitar, Eitan Yaakobi2026 · 0 citationsarXiv
The DNA Coverage Depth Problem: Duality, Weight Distributions, and Applications2603.06489v1 · Matteo Bertuzzo, Alberto Ravagnani, Eitan Yaakobi2026 · 0 citationsarXiv
Error characterization and error correction approaches in combinatorial DNA-based storage.41667543 · Preuss, Inbal, Sabary, Omer, Gabrys, Ryan et al.2026 · 0 citationsScientific reports. 2026;16(1)
Expected Recovery Time in DNA-based Distributed Storage Systems2602.07601v1 · Adi Levy, Roni Con, Eitan Yaakobi et al.2026 · 0 citationsarXiv
Analyzing Collection Strategies: A Computational Perspective on the Coupon Collector Problem2601.12351v1 · Hadas Abraham, Ido Feldman, Eitan Yaakobi2026 · 0 citationsarXiv
Reconstructing Reed-Solomon Codes from Multiple Noisy Channel Outputs2601.09947v1 · Shubhransh Singhvi, Han Mao Kiah, Eitan Yaakobi2026 · 1 citationarXiv
Error-Correcting Codes for the Sum Channel2601.10256v2 · Lyan Abboud, Eitan Yaakobi2026 · 1 citationarXiv
Efficient Synthesis for Two-Dimensional Strand Arrays with Row Constraints2601.07968v2 · Boaz Moav, Ryan Gabrys, Eitan Yaakobi2026 · 1 citationarXiv
Random Access in DNA Storage: Algorithms, Constructions, and Bounds2601.07053v2 · Chen Wang, Eitan Yaakobi2026 · 1 citationarXiv
Serving Every Symbol: All-Symbol PIR and Batch Codes2601.04041v2 · Avital Boruchovsky, Anina Gruica, Jonathan Niemann et al.2026 · 1 citationarXiv
Error-Correcting Codes for Labeled DNA Sequences2511.01280v1 · Dganit Hanania, Eitan Yaakobi2025 · 1 citationarXiv
Efficiency of Digital Photolithographic Synthesis of Large, High-Quality DNA Libraries and Microarrays using a Guanine O6 Dephosphitylation Strategy.41174019 · Santhosh, Santra, Istvánffy, Sharon, Sabary, Omer et al.2025 · 3 citationsCommunications chemistry. 2025;8(1):321
General Coverage Models: Structure, Monotonicity, and Shotgun Sequencing2510.25305v1 · Yitzchak Grunbaum, Eitan Yaakobi2025 · 0 citationsarXiv
Complex DNA Synthesis Sequences2510.21253v1 · Boaz Moav, Ryan Gabrys, Eitan Yaakobi2025 · 0 citationsarXiv
Improved Constructions of Linear Codes for Insertions and Deletions2509.26077v1 · Roee Gross, Roni Con, Eitan Yaakobi2025 · 0 citationsarXiv
Coding for Ordered Composite DNA Sequences2509.26119v3 · Besart Dollma, Ohad Elishco, Eitan Yaakobi2025 · 1 citationarXiv
Sequence Reconstruction over Coloring Channels for Protein Identification2508.02229v1 · Jessica Bariffi, Antonia Wachter-Zeh, Eitan Yaakobi2025 · 0 citationsarXiv
Dna-storalator: a computational simulator for DNA data storage.40760650 · Chaykin, Gadi, Sabary, Omer, Furman, Nili et al.2025 · 5 citationsBMC bioinformatics. 2025;26(1):204
The Coverage Depth Problem in DNA Storage Over Small Alphabets2507.20639v1 · Matteo Bertuzzo, Alberto Ravagnani, Eitan Yaakobi2025 · 4 citationsarXiv
An Efficient Guanine O6 Phosphitylation Repair Strategy for High-Quality DNA Library Synthesis via Digital Nucleic Acid Photolithography10.26434/chemrxiv-2025-f706f · Santra Santhosh, Sharon Istvánffy, Omer Sabary et al.2025 · 0 citationsChemRxiv
Optimizing the Decoding Probability and Coverage Ratio of Composite DNA2505.09533v1 · Tomer Cohen, Eitan Yaakobi2025 · 3 citationsarXiv
Correcting Multiple Substitutions in Nanopore-Sequencing Reads2505.02447v2 · Anisha Banerjee, Yonatan Yehezkeally, Antonia Wachter-Zeh et al.2025 · 0 citationsarXiv
Decoding Insertions/Deletions via List Recovery2505.02452v1 · Anisha Banerjee, Roni Con, Antonia Wachter-Zeh et al.2025 · 2 citationsarXiv
CertainSync: Rateless Set Reconciliation with Certainty2504.08314v1 · Tomer Keniagin, Eitan Yaakobi, Ori Rottenstreich2025 · 0 citationsarXiv
Function-Correcting Codes for b-Symbol Read Channels2503.12894v1 · Anamika Singh, Abhay Kumar Singh, Eitan Yaakobi2025 · 1 citationarXiv
The Labeled Coupon Collector Problem with Random Sample Sizes and Partial Recovery2502.02968v1 · Shoham Shimon Berrebi, Eitan Yaakobi, Zohar Yakhini et al.2025 · 0 citationsarXiv
DeepDIVE: Optimizing Input-Constrained Distributions for Composite DNA Storage via Multinomial Channel2501.15172v1 · Adir Kobovich, Eitan Yaakobi, Nir Weinberger2025 · 3 citationsarXiv
Making it to First: The Random Access Problem in DNA Storage2501.12274v2 · Avital Boruchovsky, Ohad Elishco, Ryan Gabrys et al.2025 · 4 citationsarXiv
Bounds and Codes for General Phased Burst Errors2501.12280v2 · Sebastian Bitzer, Andrea Di Giusto, Alberto Ravagnani et al.2025 · 1 citationarXiv
Reed-Solomon Codes Against Insertions and Deletions: Full-Length and Rate- Codes2501.11371v2 · Peter Beelen, Roni Con, Anina Gruica et al.2025 · 5 citationsarXiv
Studying the Cycle Complexity of DNA Synthesis2412.05865v1 · Amit Zrihan, Eitan Yaakobi, Zohar Yakhini2024 · 5 citationsarXiv
The zettabyte era is in our DNA.39516373 · Bar-Lev, Daniella, Sabary, Omer, Yaakobi, Eitan2024 · 21 citationsNature computational science. 2024;4(11):813-817
Beyond the Alphabet: Deep Signal Embedding for Enhanced DNA Clustering2410.06188v2 · Hadas Abraham, Barak Gahtan, Adir Kobovich et al.2024 · 0 citationsarXiv
High Information Density and Low Coverage Data Storage in DNA with Efficient Channel Coding Schemes2410.04886v3 · Yi Ding, Xuan He, Tuan Thanh Nguyen et al.2024 · 1 citationarXiv
Conditional Entropies of k-Deletion/Insertion Channels2407.10026v2 · Shubhransh Singhvi, Omer Sabary, Daniella Bar-Lev et al.2024 · 0 citationsarXiv
Robust Gray Codes Approaching the Optimal Rate2406.17689v1 · Roni Con, Dorsa Fathollahi, Ryan Gabrys et al.2024 · 0 citationsarXiv
Representing Information on DNA using Patterns Induced by Enzymatic Labeling2405.08475v1 · Daniella Bar-Lev, Tuvi Etzion, Eitan Yaakobi et al.2024 · 1 citationarXiv
Optimal Almost-Balanced Sequences2405.08625v1 · Daniella Bar-Lev, Adir Kobovich, Orian Leitersdorf et al.2024 · 4 citationsarXiv
Private Repair of a Single Erasure in Reed-Solomon Codes2405.06583v1 · Stanislav Kruglik, Han Mao Kiah, Son Hoang Dau et al.2024 · 1 citationarXiv
GradHC: highly reliable gradual hash-based clustering for DNA storage systems.38648049 · Ben Shabat, Dvir, Hadad, Adar, Boruchovsky, Avital et al.2024 · 8 citationsBioinformatics (Oxford, England). 2024;40(5)
Coding for Composite DNA to Correct Substitutions, Strand Losses, and Deletions2404.12868v1 · Frederik Walter, Omer Sabary, Antonia Wachter-Zeh et al.2024 · 22 citations2024 IEEE International Symposium on Information Theory (ISIT)
Career total: 407 works. 158 are in this corpus.Showing the 50 most recent.
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