AA
Ahmed Alaa
cs.LGstat.MLcs.AIcs.ITmath.ITcs.CLstat.MEcs.CVMachine Learningcs.NI
On Valency
published · living versionsW_9y8fas49·v1 · currentpublished
Diagnosis by Composition: Detecting and Localizing Unseen Diseases by Composing Learned Radiological Findings
with Kaihua Hou, Wei Liu, Yi Huang, Hao Zhang +8
1 version
Preprints & journals
97 papers in the corpus · 2014–2026Large language model-generated clinical summaries in emergency departments: A blinded comparison study.42424264 · Golchini, Niloufar, Mehandru, Nikita, Alaa, Ahmed et al.2026 · 0 citationsPLOS digital health. 2026;5(7):e0001491
Advances in LLM Reasoning Enable Flexibility in Clinical Problem-Solving.42317846 · Shidara, Kie, Prem, Preethi, Kim, Jonathan et al.2026 · 0 citationsAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science. 2026;2026:428-437
Towards causal effect estimation with learned instrument representations2602.10370v3 · Frances Dean, Jenna Fields, Radhika Bhalerao et al.2026 · 0 citationsarXiv
ReasonEdit: Editing Vision-Language Models using Human Reasoning2602.02408v5 · Jiaxing Qiu, Kaihua Hou, Roxana Daneshjou et al.2026 · 0 citationsarXiv
Aligning Language Model Benchmarks with Pairwise Preferences2602.02898v5 · Marco Gutierrez, Xinyi Leng, Hannah Cyberey et al.2026 · 0 citationsarXiv
MedEvalArena: A Self-Generated, Peer-Judged Benchmark for Medical Reasoning10.64898/2026.01.27.26344905v1 · Prem, P., Shidara, K., Kuppa, V. et al.2026 · 0 citationsmedRxiv
Data reuse enables cost-efficient randomized trials of medical AI models2511.08986v2 · Michael Nercessian, Wenxin Zhang, Alexander Schubert et al.2025 · 0 citationsarXiv
Extracting TNFi switching reasons and trajectories from real-world data using large language models.41234243 · Miao, Brenda Y, Binvignat, Marie, Garcia-Agundez, Augusto et al.2025 · 1 citationJAMIA open. 2025;8(6):ooaf132
BioAgents: Bridging the gap in bioinformatics analysis with multi-agent systems.41203737 · Mehandru, Nikita, Hall, Amanda K, Melnichenko, Olesya et al.2025 · 19 citationsScientific reports. 2025;15(1):39036
A longitudinal analysis of declining medical safety messaging in generative AI models.41038984 · Sharma, Sonali, Alaa, Ahmed M, Daneshjou, Roxana2025 · 14 citationsNPJ digital medicine. 2025;8(1):592
Physician- versus Large Language Model-Generated Clinical Summaries in the Emergency Department10.1101/2025.08.13.25333609v3 · Golchini, N. B., Mehandru, N., Alaa, A. et al.2025 · 1 citationmedRxiv
Generative AI enables medical image segmentation in ultra low-data regimes.40659619 · Zhang, Li, Jindal, Basu, Alaa, Ahmed et al.2025 · 39 citationsNature communications. 2025;16(1):6486
ER-Reason: A Benchmark Dataset for LLM Clinical Reasoning in the Emergency Room2505.22919v3 · Nikita Mehandru, Niloufar Golchini, Namrata Garg et al.2025 · 0 citationsarXiv
Model Editing with Graph-Based External Memory2505.18343v2 · Yash Kumar Atri, Ahmed Alaa, Thomas Hartvigsen2025 · 0 citationsarXiv
Medical Large Language Model Benchmarks Should Prioritize Construct Validity2503.10694v1 · Ahmed Alaa, Thomas Hartvigsen, Niloufar Golchini et al.2025 · 2 citationsarXiv
Norm Growth and Stability Challenges in Localized Sequential Knowledge Editing2502.19416v1 · Akshat Gupta, Christine Fang, Atahan Ozdemir et al.2025 · 0 citationsarXiv
Generalized Venn and Venn-Abers Calibration with Applications in Conformal Prediction2502.05676v3 · Lars van der Laan, Ahmed Alaa2025 · 0 citationsarXiv
Lifelong Knowledge Editing requires Better Regularization2502.01636v2 · Akshat Gupta, Phudish Prateepamornkul, Maochuan Lu et al.2025 · 1 citationarXiv
Conformal Prediction Sets with Improved Conditional Coverage using Trust Scores2501.10139v2 · Jivat Neet Kaur, Michael I. Jordan, Ahmed Alaa2025 · 1 citationarXiv
Pruning the Way to Reliable Policies: A Multi-Objective Deep Q-Learning Approach to Critical Care.38885106 · Shirali, Ali, Schubert, Alexander, Alaa, Ahmed2024 · 6 citationsIEEE journal of biomedical and health informatics. 2024;28(10):6268-6279
Veridical Data Science for Medical Foundation Models2409.10580v1 · Ahmed Alaa, Bin Yu2024 · 0 citationsarXiv
Deep learning-derived splenic radiomics, genomics, and coronary artery disease.39185532 · Kamineni, Meghana, Raghu, Vineet, Truong, Buu et al.2024 · 3 citationsmedRxiv : the preprint server for health sciences. 2024
Large Language Models as Co-Pilots for Causal Inference in Medical Studies2407.19118v1 · Ahmed Alaa, Rachael V. Phillips, Emre K\ic\iman et al.2024 · 1 citationarXiv
Seq-to-Final: A Benchmark for Tuning from Sequential Distributions to a Final Time Point2407.09642v1 · Christina X Ji, Ahmed M Alaa, David Sontag2024 · 0 citationsarXiv
Mean-field Chaos Diffusion Models2406.05396v1 · Sungwoo Park, Dongjun Kim, Ahmed Alaa2024 · 1 citationarXiv
Prediction-powered Generalization of Causal Inferences2406.02873v1 · Ilker Demirel, Ahmed Alaa, Anthony Philippakis et al.2024 · 0 citationsarXiv
Dr-LLaVA: Visual Instruction Tuning with Symbolic Clinical Grounding2405.19567v2 · Shenghuan Sun, Alexander Schubert, Gregory M. Goldgof et al.2024 · 2 citationsarXiv
A machine learning approach for predicting textbook outcome after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy.38651936 · Ashraf Ganjouei, Amir, Romero-Hernandez, Fernanda, Wang, Jaeyun Jane et al.2024 · 1 citationWorld journal of surgery. 2024;48(6):1404-1413
Evaluating large language models as agents in the clinic.38570554 · Mehandru, Nikita, Miao, Brenda Y, Almaraz, Eduardo Rodriguez et al.2026 · 142 citationsNPJ digital medicine. 2024;7(1):84
Generation of guideline-based clinical decision trees in oncology using large language models10.1101/2024.03.04.24303737v1 · Miao, B. Y., Rodriguez Almaraz, E., Ashraf Ganjouei, A. et al.2024 · 4 citationsmedRxiv
Med-Real2Sim: Non-Invasive Medical Digital Twins using Physics-Informed Self-Supervised Learning2403.00177v3 · Keying Kuang, Frances Dean, Jack B. Jedlicki et al.2024 · 3 citationsarXiv
Self-Calibrating Conformal Prediction2402.07307v3 · Lars van der Laan, Ahmed M. Alaa2024 · 4 citationsarXiv
Generating new drug repurposing hypotheses using disease-specific hypergraphs.38160285 · Jain, Ayush, Charpignon, Marie-Laure, Chen, Irene Y et al.2024 · 4 citationsPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2024;29:261-275
DMLR: Data-centric Machine Learning Research -- Past, Present and Future2311.13028v2 · Luis Oala, Manil Maskey, Lilith Bat-Leah et al.2023 · 7 citationsarXiv
Generating Drug Repurposing Hypotheses through the Combination of Disease-Specific Hypergraphs2311.09596v1 · Ayush Jain, Marie Laure-Charpignon, Irene Y. Chen et al.2023 · 0 citationsarXiv
Estimating Uncertainty in Multimodal Foundation Models using Public Internet Data2310.09926v2 · Shiladitya Dutta, Hongbo Wei, Lars van der Laan et al.2023 · 1 citationarXiv
InstructCV: Instruction-Tuned Text-to-Image Diffusion Models as Vision Generalists2310.00390v3 · Yulu Gan, Sungwoo Park, Alexander Schubert et al.2023 · 0 citationsarXiv
Large Language Models as Agents in the Clinic2309.10895v1 · Nikita Mehandru, Brenda Y. Miao, Eduardo Rodriguez Almaraz et al.2023 · 1 citationarXiv
Conformal Meta-learners for Predictive Inference of Individual Treatment Effects2308.14895v1 · Ahmed Alaa, Zaid Ahmad, Mark van der Laan2023 · 3 citationsarXiv
DiffInfinite: Large Mask-Image Synthesis via Parallel Random Patch Diffusion in Histopathology2306.13384v2 · Marco Aversa, Gabriel Nobis, Miriam Hagele et al.2023 · 16 citationsarXiv
Aligning Synthetic Medical Images with Clinical Knowledge using Human Feedback2306.12438v1 · Shenghuan Sun, Gregory M. Goldgof, Atul Butte et al.2023 · 6 citationsarXiv
Large-Scale Study of Temporal Shift in Health Insurance Claims2305.05087v2 · Christina X Ji, Ahmed M Alaa, David Sontag2023 · 0 citationsarXiv
Conformalized Unconditional Quantile Regression2304.01426v1 · Ahmed M. Alaa, Zeshan Hussain, David Sontag2023 · 3 citationsarXiv
Matters Arising: PREDICT underestimates survival of patients with HER2-positive early-stage breast cancer.36928829 · Alaa, Ahmed M, Harris, Adrian L, van der Schaar, Mihaela2023 · 1 citationNPJ breast cancer. 2023;9(1):13
External validity of machine learning-based prognostic scores for cystic fibrosis: A retrospective study using the UK and Canadian registries.36812602 · Qin, Yuchao, Alaa, Ahmed, Floto, Andres et al.2024 · 4 citationsPLOS digital health. 2023;2(1):e0000179
Comparing COVID-19 risk factors in Brazil using machine learning: the importance of socioeconomic, demographic and structural factors.34341397 · Baqui, Pedro, Marra, Valerio, Alaa, Ahmed M et al.2021 · 57 citationsScientific reports. 2021;11(1):15591
How Faithful is your Synthetic Data? Sample-level Metrics for Evaluating and Auditing Generative Models2102.08921v2 · Ahmed M. Alaa, Boris van Breugel, Evgeny Saveliev et al.2021 · 75 citationsarXiv
Application of a novel machine learning framework for predicting non-metastatic prostate cancer-specific mortality in men using the Surveillance, Epidemiology, and End Results (SEER) database.33549512 · Lee, Changhee, Light, Alexander, Alaa, Ahmed et al.2021 · 128 citationsThe Lancet. Digital health. 2021;3(3):e158-e165
Learning Matching Representations for Individualized Organ Transplantation Allocation2101.11769v2 · Can Xu, Ahmed M. Alaa, Ioana Bica et al.2021 · 4 citationsarXiv
How artificial intelligence and machine learning can help healthcare systems respond to COVID-19.33318723 · van der Schaar, Mihaela, Alaa, Ahmed M, Floto, Andres et al.2025 · 211 citationsMachine learning. 2021;110(1):1-14
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