JD
Jennifer D'Souza
cs.AIcs.CLcs.DLcs.IRcs.ITmath.ITcs.LGcs.CVcond-mat.mtrl-sciCOVID-19
On Valency
published · living versionsW_xpz74fq9·v1 · currentpublished
When Does Bigger Help? A Controlled Study of LLM Scale for Ontology Learning
with Hamed Babaei Giglou, Sören Auer
1 version
Preprints & journals
66 papers in the corpus · 2013–2026Agentic schema-guided extraction of materials process knowledge from scientific literature2610.06322v1 · Sameer Sadruddin, Jennifer D'Souza2026 · 0 citationsarXiv
Mined from Scientific Literature: Process Schemas for Atomic Layer Deposition and Etching in Materials Science2609.12139v1 · Sameer Sadruddin, Eleni Poupaki, Alex Watkins et al.2026 · 0 citationsarXivon Valency
When Does Bigger Help? A Controlled Study of LLM Scale for Ontology Learning2608.31118v1 · Hamed Babaei Giglou, Soren Auer, Jennifer D'Souza2026 · 0 citationsarXivon Valency
OntoAligner-Ensemble: Voting-Based Fusion across Heterogeneous Ontology Alignment Techniques2608.31137v1 · Hamed Babaei Giglou, Soren Auer, Peio Popov et al.2026 · 0 citationsarXiv
Do General NLP Embeddings Capture Ontological Reasoning?2609.00177v1 · Hamed Babaei Giglou, Jennifer D'Souza, Soren Auer2026 · 0 citationsarXiv
A Pathway to General-Purpose Scientific AI: Multimodal Comprehension of Scientific Images2608.14075v1 · Jennifer D'Souza, Fahad Ahmed, Cecilia Andrea Bustamante Andrade et al.2026 · 0 citationsarXiv
SciSchema.org: A Multidisciplinary Collection of Schemas for Structured Scientific Process Descriptions2607.27955v1 · Jennifer D'Souza, Sameer Sadruddin, Anisa Rula et al.2026 · 0 citationsarXiv
ICDAR 2026 Competition on Information Extraction from Atomic Layer Deposition/Etching (ALD/E) Scientific Figures2607.26848v1 · Fahad Ahmed, Soren Auer, Jennifer D'Souza2026 · 1 citationarXiv
OntoLearner: A Modular Python Library for Ontology Learning with Large Language Models2607.01977v1 · Hamed Babaei Giglou, Jennifer D'Souza, Andrei Aioanei et al.2026 · 0 citationsarXiv
An Extreme Multi-label Text Classification (XMTC) Library Dataset: What if we took "Use of Practical AI in Digital Libraries" seriously?2603.10876v1 · Jennifer D'Souza, Sameer Sadruddin, Maximilian Kahler et al.2026 · 1 citationarXiv
Diagnosing Structural Failures in LLM-Based Evidence Extraction for Meta-Analysis2602.10881v1 · Zhiyin Tan, Jennifer D'Souza2026 · 1 citationarXiv
Publishing FAIR and Machine-actionable Reviews in Materials Science: The Case for Symbolic Knowledge in Neuro-symbolic Artificial Intelligence2601.05051v1 · Jennifer D'Souza, Soren Auer, Eleni Poupaki et al.2026 · 0 citationsarXiv
Towards AI-Supported Research: a Vision of the TIB AIssistant2512.16447v1 · Soren Auer, Allard Oelen, Mohamad Yaser Jaradeh et al.2025 · 0 citationsarXiv
NFDI4DS Shared Tasks for Scholarly Document Processing2509.22141v1 · Raia Abu Ahmad, Rana Abdulla, Tilahun Abedissa Taffa et al.2025 · 0 citationsarXiv
Toward Purpose-oriented Topic Model Evaluation enabled by Large Language Models2509.07142v1 · Zhiyin Tan, Jennifer D'Souza2025 · 8 citationsInternational Journal on Digital Libraries, vol. 26, no. 4, pp. 23, December 2025
DeepResearch_Eco: A Recursive Agentic Workflow for Complex Scientific Question Answering in Ecology10.1101/2025.07.14.664755v1 · D'Souza, J., Sander, E. K., Aioanei, A.2025 · 1 citationbioRxiv
DeepResearch: A Recursive Agentic Workflow for Complex Scientific Question Answering in Ecology2507.10522v1 · Jennifer D'Souza, Endres Keno Sander, Andrei Aioanei2025 · 0 citationsarXiv
Research Knowledge Graphs: the Shifting Paradigm of Scholarly Information Representation2506.07285v1 · Matthaus Zloch, Danilo Dessi, Jennifer D'Souza et al.2025 · 2 citationsarXiv
YESciEval: Robust LLM-as-a-Judge for Scientific Question Answering2505.14279v2 · Jennifer D'Souza, Hamed Babaei Giglou, Quentin Munch2025 · 5 citationsarXiv
SemEval-2025 Task 5: LLMs4Subjects -- LLM-based Automated Subject Tagging for a National Technical Library's Open-Access Catalog2504.07199v3 · Jennifer D'Souza, Sameer Sadruddin, Holger Israel et al.2025 · 1 citationarXiv
LLMs4SchemaDiscovery: A Human-in-the-Loop Workflow for Scientific Schema Mining with Large Language Models2504.00752v1 · Sameer Sadruddin, Jennifer D'Souza, Eleni Poupaki et al.2025 · 8 citationsarXiv
OntoAligner: A Comprehensive Modular and Robust Python Toolkit for Ontology Alignment2503.21902v1 · Hamed Babaei Giglou, Jennifer D'Souza, Oliver Karras et al.2025 · 9 citationsarXiv
Bridging the Evaluation Gap: Leveraging Large Language Models for Topic Model Evaluation2502.07352v1 · Zhiyin Tan, Jennifer D'Souza2025 · 1 citationarXiv
Transforming Science with Large Language Models: A Survey on AI-assisted Scientific Discovery, Experimentation, Content Generation, and Evaluation2502.05151v3 · Steffen Eger, Yong Cao, Jennifer D'Souza et al.2025 · 10 citationsarXiv
Mining for Species, Locations, Habitats, and Ecosystems from Scientific Papers in Invasion Biology: A Large-Scale Exploratory Study with Large Language Models2501.18287v1 · Jennifer D'Souza, Zachary Laubach, Tarek Al Mustafa et al.2025 · 2 citationsarXiv
LLMs4Synthesis: Leveraging Large Language Models for Scientific Synthesis2409.18812v1 · Hamed Babaei Giglou, Jennifer D'Souza, Soren Auer2024 · 2 citationsarXiv
LLMs4OL 2024 Overview: The 1st Large Language Models for Ontology Learning Challenge2409.10146v1 · Hamed Babaei Giglou, Jennifer D'Souza, Soren Auer2024 · 15 citationsarXiv
Instruction Finetuning for Leaderboard Generation from Empirical AI Research2408.10141v1 · Salomon Kabongo, Jennifer D'Souza2024 · 0 citationsarXiv
Large Language Models as Evaluators for Scientific Synthesis2407.02977v1 · Julia Evans, Jennifer D'Souza, Soren Auer2024 · 2 citationsarXiv
Scholarly Question Answering using Large Language Models in the NFDI4DataScience Gateway2406.07257v1 · Hamed Babaei Giglou, Tilahun Abedissa Taffa, Rana Abdullah et al.2024 · 1 citationarXiv
Exploring the Latest LLMs for Leaderboard Extraction2406.04383v2 · Salomon Kabongo, Jennifer D'Souza, Soren Auer2024 · 1 citationarXiv
Effective Context Selection in LLM-based Leaderboard Generation: An Empirical Study2407.02409v1 · Salomon Kabongo, Jennifer D'Souza, Soren Auer2024 · 4 citationsarXiv
A FAIR and Free Prompt-based Research Assistant2405.14601v1 · Mahsa Shamsabadi, Jennifer D'Souza2024 · 2 citationsarXiv
Astro-NER -- Astronomy Named Entity Recognition: Is GPT a Good Domain Expert Annotator?2405.02602v1 · Julia Evans, Sameer Sadruddin, Jennifer D'Souza2024 · 1 citationarXiv
Evaluating Large Language Models for Structured Science Summarization in the Open Research Knowledge Graph2405.02105v1 · Vladyslav Nechakhin, Jennifer D'Souza, Steffen Eger2024 · 11 citationsarXiv
LLMs4OM: Matching Ontologies with Large Language Models2404.10317v2 · Hamed Babaei Giglou, Jennifer D'Souza, Felix Engel et al.2024 · 24 citationsarXiv
Toward FAIR Semantic Publishing of Research Dataset Metadata in the Open Research Knowledge Graph2404.08443v1 · Raia Abu Ahmad, Jennifer D'Souza, Matthaus Zloch et al.2024 · 1 citationIn Joint Proceedings of the Onto4FAIR 2023 Workshops: Collocated with FOIS 2023 and SEMANTICS 2023. pp.23-31. https://hal.science/hal-04312604
From Keywords to Structured Summaries: Streamlining Scholarly Information Access2402.14622v2 · Mahsa Shamsabadi, Jennifer D'Souza2024 · 0 citationsarXiv
Large Language Models for Scientific Information Extraction: An Empirical Study for Virology2401.10040v1 · Mahsa Shamsabadi, Jennifer D'Souza, Soren Auer2024 · 10 citationsarXiv
Impact of COVID-19 research: a study on predicting influential scholarly documents using machine learning and a domain-independent knowledge graph.38017587 · Rabby, Gollam, D'Souza, Jennifer, Oelen, Allard et al.2023 · 4 citationsJournal of biomedical semantics. 2023;14(1):18
Toward Semantic Publishing in Non-Invasive Brain Stimulation: A Comprehensive Analysis of rTMS Studies2310.06517v1 · Swathi Anil, Jennifer D'Souza2023 · 0 citationsarXiv
Procedural Text Mining with Large Language Models2310.03376v1 · Anisa Rula, Jennifer D'Souza2023 · 18 citationsarXiv
LLMs4OL: Large Language Models for Ontology Learning2307.16648v2 · Hamed Babaei Giglou, Jennifer D'Souza, Soren Auer2023 · 133 citationsarXiv
Evaluating Prompt-based Question Answering for Object Prediction in the Open Research Knowledge Graph2305.12900v2 · Jennifer D'Souza, Moussab Hrou, Soren Auer2023 · 0 citationsarXiv
ORKG-Leaderboards: A Systematic Workflow for Mining Leaderboards as a Knowledge Graph2305.11068v1 · Salomon Kabongo, Jennifer D'Souza, Soren Auer2023 · 8 citationsarXiv
Evaluating BERT-based Scientific Relation Classifiers for Scholarly Knowledge Graph Construction on Digital Library Collections2305.02291v1 · Ming Jiang, Jennifer D'Souza, Soren Auer et al.2023 · 8 citationsInternational Journal on Digital Libraries (2022)
Zero-shot Entailment of Leaderboards for Empirical AI Research2303.16835v1 · Salomon Kabongo, Jennifer D'Souza, Soren Auer2023 · 5 citationsarXiv
Clustering Semantic Predicates in the Open Research Knowledge Graph2210.02034v1 · Omar Arab Oghli, Jennifer D'Souza, Soren Auer2022 · 3 citationsarXiv
Overview of STEM Science as Process, Method, Material, and Data Named Entities2205.11863v1 · Jennifer D'Souza2022 · 0 citationsarXiv
The Digitalization of Bioassays in the Open Research Knowledge Graph2203.14574v1 · Jennifer D'Souza, Anita Monteverdi, Muhammad Haris et al.2022 · 0 citationsarXiv
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