AS
Alexander S. Szalay
astro-phastro-ph.COastro-ph.GAastro-ph.IMcs.DBcs.DCcs.CEastro-ph.SRSoftwarecs.LG
On Valency
published · living versionsW_qwe58ep4·v1 · currentpublished
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience
with Randal Burns, William Gray Roncal, Dean Kleissas, Kunal Lillaney +15
1 version
Preprints & journals
355 papers in the corpus · 1984–2026Now Is the Time to Build a National Data Ecosystem for Materials Science and Chemistry Research Data.35505822 · Campo, Eva M, Shankar, Sadasivan, Szalay, Alexander S et al.2026 · 3 citationsACS omega. 2022;7(16):13398-13402
Galactic Archaeology with the Subaru `\=Onohi`ula Prime Focus Spectrograph Strategic Program2604.09875v4 · Masashi Chiba, Rosemary F. G. Wyse, Evan N. Kirby et al.2026 · 1 citationarXiv
Interpretable spherical geometry of single-cell state transitions from dominant principal components10.64898/2026.09.11.751061v1 · Yuan, L., Li, X., Le, M. et al.2026 · 0 citationsbioRxiv
Generalization from Low- to Moderate-Resolution Spectra with Neural Networks for Stellar Parameter Estimation: A Case Study with DESI2602.15021v2 · Xiaosheng Zhao, Yuan-Sen Ting, Rosemary F.G. Wyse et al.2026 · 0 citationsarXiv
Learning at the Right Pace: Adaptive Data Scheduling Improves LLM Reinforcement Learning2606.22305v1 · Zicheng Xu, Ruixuan Zhang, Yu-Neng Chuang et al.2026 · 0 citationsarXiv
DTS: Enhancing Large Reasoning Models via Decoding Tree Sketching2511.00640v2 · Zicheng Xu, Xiuyi Lou, Guanchu Wang et al.2025 · 0 citationsarXiv
AstroID resource: a scalable, relational database structure for longitudinal biomarker discovery.41448831 · Will, Elizabeth M, Green, Benjamin F, Carey, Scott et al.2025 · 0 citationsJournal for immunotherapy of cancer. 2025;13(12)
Society for Immunotherapy of Cancer: Standards for Reporting of Multiplex Immunohistochemistry/Immunofluorescence Assays (STORMI).41423269 · Sater, Sam, Bifulco, Carlo B, Rodriguez-Canales, Jaime et al.2025 · 10 citationsJournal for immunotherapy of cancer. 2025;13(12)
Self-ensemble: Mitigating Confidence Mis-calibration for Large Language Models2506.01951v2 · Zicheng Xu, Guanchu Wang, Guangyao Zheng et al.2025 · 0 citationsarXiv
Machine Learning Techniques to Distinguish Giant Stars from Dwarf Stars Using Only Photometry -- Pushing Redwards2510.07005v1 · Keyi Ding, Carrie Filion, Rosemary F.G. Wyse et al.2025 · 0 citationsarXiv
Novel Predictive Spatial Biomarker in Non-Small Cell Lung Carcinoma: The Diversity of Niches Unlocking Treatment Sensitivity (DONUTS)10.1101/2025.08.13.665980v2 · Cottrell, T. R., Roskes, J. S., Fotheringham, M. et al.2025 · 2 citationsbioRxiv
Analysis of inertial-range intermittency in forward and inverse cascade regions in isotropic turbulence2504.04595v1 · H. Yao, M. Schnaubelt, A. Lubonja et al.2025 · 0 citationsarXiv
Society for Immunotherapy of Cancer: updates and best practices for multiplex immunohistochemistry (IHC) and immunofluorescence (IF) image analysis and data sharing.39779210 · Taube, Janis M, Sunshine, Joel C, Angelo, Michael et al.2025 · 26 citationsJournal for immunotherapy of cancer. 2025;13(1)
Sundial: Using Sunlight to Reconstruct Global Timestamps1901.09670v1 · Jayant Gupchup, Razvan Musaloiu-E., Alex Szalay et al.2019 · 22 citationsEWSN 2009 Proceedings of the 6th European Conference on Wireless Sensor Networks
Uncertainty of line-of-sight velocity measurement of faint stars from low and medium resolution optical spectra2407.14943v1 · L'aszl'o Dobos, Alexander S. Szalay, Tam'as Budav'ari et al.2024 · 0 citationsarXiv
Estimation of line-of-sight velocities of individual galaxies using neural networks I. Modelling redshift-space distortions at large scales2312.03469v2 · Hongxiang Chen, Jie Wang, Tianxiang Mao et al.2023 · 7 citationsarXiv
Comparing and Correcting Spectral Sensitivities between Multispectral Microscopes: A Prerequisite to Clinical Implementation.37370719 · Eminizer, Margaret, Nagy, Melinda, Engle, Elizabeth L et al.2024 · 4 citationsCancers. 2023;15(12)
Impact of an Ultra-Endurance Marathon on Cardiac Function in Association with Cardiovascular Biomarkers.38851665 · Burger, Achim Leo, Wegberger, Claudia, Tscharre, Maximilian et al.2024 · 10 citationsSports medicine - open. 2024;10(1):67
Comparing local energy cascade rates in isotropic turbulence using structure function and filtering formulations2307.10568v1 · H. Yao, M. Schnaubelt, A. Szalay et al.2023 · 20 citationsJournal of Fluid Mechanics vol. 980, A42, 2024
First Organoid Intelligence (OI) workshop to form an OI community.36925616 · Morales Pantoja, Itzy E, Smirnova, Lena, Muotri, Alysson R et al.2024 · 55 citationsFrontiers in artificial intelligence. 2023;6:1116870
AstroInformatics: Recommendations for Global Cooperation2401.04623v1 · Ashish Mahabal, Pranav Sharma, Rana Adhikari et al.2024 · 1 citationarXiv
Vortices within vortices: hierarchical nature of vortex tubes in turbulence1210.3325v3 · Kai Burger, Marc Treib, Rudiger Westermann et al.2012 · 14 citationsarXiv
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.24401992 · Burns, Randal, Roncal, William Gray, Kleissas, Dean et al.2023 · 57 citationsScientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management. 2013
Whole-Slide Imaging, Mutual Information Registration for Multiplex Immunohistochemistry and Immunofluorescence.37196983 · Doyle, Joshua, Green, Benjamin F, Eminizer, Margaret et al.2023 · 15 citationsLaboratory investigation; a journal of technical methods and pathology. 2023;103(8):100175
Short-read aligner performance in germline variant identification.37527006 · Wilton, Richard, Szalay, Alexander S2023 · 8 citationsBioinformatics (Oxford, England). 2023;39(8)
Performance optimization in DNA short-read alignment.35139149 · Wilton, Richard, Szalay, Alexander S2023 · 25 citationsBioinformatics (Oxford, England). 2022;38(8):2081-2087
Playing catch-up in building an open research commons2208.04682v1 · Philip E. Bourne, Vivien Bonazzi, Amy Brand et al.2022 · 14 citationsarXiv
A Light-weight Interpretable Compositional Model for Nuclei Detection and Weakly-Supervised Segmentation2110.13846v2 · Yixiao Zhang, Adam Kortylewski, Qing Liu et al.2021 · 1 citationarXiv
The Calibration and Data Products of the Galaxy Evolution Explorer0706.0755v1 · Patrick Morrissey, Tim Conrow, Tom A. Barlow et al.2007 · 1,162 citationsarXiv
Molecular phenotypes associated with antipsychotic drugs in the human caudate nucleus.35236959 · Perzel Mandell, Kira A, Eagles, Nicholas J, Deep-Soboslay, Amy et al.2022 · 33 citationsMolecular psychiatry. 2022;27(4):2061-2067
Now is the time to build a national data ecosystem for materials science and chemistry research data2201.00247v1 · E.M. Campo, S. Shankar, A.S. Szalay et al.2022 · 3 citationsarXiv
Toward Millions of File System IOPS on Low-Cost, Commodity Hardware.24402052 · Zheng, Da, Burns, Randal, Szalay, Alexander S2021 · 41 citationsICS ... : proceedings of the ... ACM International Conference on Supercomputing. International Conference on Supercomputing. 2013
Molecular phenotypes associated with antipsychotic drugs in the human caudate nucleus10.1101/2021.10.11.21264848v1 · Perzel Mandell, K. A., Eagles, N. J., Deep-Soboslay, A. et al.2021 · 33 citationsmedRxiv
Genome-wide sequencing-based identification of methylation quantitative trait loci and their role in schizophrenia risk.34475392 · Perzel Mandell, Kira A, Eagles, Nicholas J, Wilton, Richard et al.2021 · 72 citationsNature communications. 2021;12(1):5251
Characterizing the dynamic and functional DNA methylation landscape in the developing human cortex.32602773 · Perzel Mandell, Kira A, Price, Amanda J, Wilton, Richard et al.2021 · 32 citationsEpigenetics. 2021;16(1):1-13
Indra: a Public Computationally Accessible Suite of Cosmological $N$-body Simulations2101.03631v2 · Bridget Falck, Jie Wang, Adrian Jenkins et al.2021 · 14 citationsMNRAS 2021, Volume 506, Issue 2, pp. 2659-2670
Analysis of multispectral imaging with the AstroPath platform informs efficacy of PD-1 blockade.34112666 · Berry, Sneha, Giraldo, Nicolas A, Green, Benjamin F et al.2021 · 209 citationsScience (New York, N.Y.). 2021;372(6547)
Wireless sensor network for in situ soil moisture monitoring2102.10260v1 · Jianing Fang, Chuheng Hu, Nour Smaoui et al.2021 · 2 citationsarXiv
Baryon acoustic oscillations reconstruction using convolutional neural networks2002.10218v3 · Tian-Xiang Mao, Jie Wang, Baojiu Li et al.2020 · 31 citationsMNRAS, 501, 1499-1510 (2021)
Arioc: High-concurrency short-read alignment on multiple GPUs.33166275 · Wilton, Richard, Szalay, Alexander S2021 · 14 citationsPLoS computational biology. 2020;16(11):e1008383
The Pan-STARRS1 Database and Data Products1612.05243v3 · H. A. Flewelling, E. A. Magnier, K. C. Chambers et al.2016 · 836 citationsarXiv
Digital Pathology Analysis Quantifies Spatial Heterogeneity of CD3, CD4, CD8, CD20, and FoxP3 Immune Markers in Triple-Negative Breast Cancer.33192595 · Mi, Haoyang, Gong, Chang, Sulam, Jeremias et al.2020 · 80 citationsFrontiers in physiology. 2020;11:583333
Sketch and Scale: Geo-distributed tSNE and UMAP2011.06103v1 · Viska Wei, Nikita Ivkin, Vladimir Braverman et al.2020 · 7 citationsarXiv
Widespread methylation quantitative trait loci and their role in schizophrenia risk10.1101/2020.09.24.311878v1 · Perzel Mandell, K. A., Eagles, N. J., Wilton, R. et al.2020 · 2 citationsbioRxiv
SciServer: a Science Platform for Astronomy and Beyond2001.08619v2 · Manuchehr Taghizadeh-Popp, Jai Won Kim, Gerard Lemson et al.2020 · 54 citationsarXiv
Halo Spin from Primordial Inner Motions1904.03201v3 · Mark C. Neyrinck (Ikerbasque, UPV Bilbao), Miguel A. Aragon-Calvo (UNAM et al.2019 · 19 citationsThe Open Journal of Astrophysics, vol. 3, id. 3 (2020)
Six Dimensional Streaming Algorithm for Cluster Finding in N-Body Simulations1912.11432v1 · Aidan Reilly, Nikita Ivkin (2, Gerard Lemson et al.2019 · 0 citationsarXiv
Fractal distribution of galaxies modeled by a cellular-automaton-type stochastic process.10034857 · Vicsek, Szalay2019 · 22 citationsPhysical review letters. 1987;58(26):2818-2821
The Discovery of a High-Redshift Quasar without Emission Lines from Sloan Digital Sky Survey Commissioning Data.10550277 · Fan, Strauss, Gunn et al.2019 · 127 citationsThe Astrophysical journal. 1999;526(2):L57-L60
Cosmological Parameters from the Eigenmode Analysis of the Las Campanas Redshift Survey.10828994 · Matsubara, Szalay, Landy2019 · 18 citationsThe Astrophysical journal. 2000;535(1):L1-L4
Career total: 963 works. 355 are in this corpus.Showing the 50 most recent.
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