MS
Mert R. Sabuncu
cs.CVcs.LGeess.IVAlgorithmsneurosciencestat.MLMachine LearningMagnetic Resonance ImagingDeep LearningSubtraction Technique
On Valency
published · living versionsW_pqtvpzxp·v1 · currentpublished
Destructive augmentations for prostate lesion segmentation on heterogeneous biparametric MRI data
with Thibault Heintz, Rachit Saluja, Seungbin Park, Daniel Margolis +2
1 version
W_xnm3qqcb·v1published
Preprints & journals
250 papers in the corpus · 2004–2026PathLang: A Language-Centered Benchmark for Vision-Language Models in Computational Pathology2610.11329v1 · Fanqi Cheng, Kuo Gong, Shangke Liu et al.2026 · 0 citationsarXiv
The Diagnostic Yield of Whole-Body MRI as a Multi-disease Screening Modality: A Systematic Review and Meta-analysis.42823587 · Ahsan, Muhammad Danyal, Frontera, Nicole, Gurram, Anoop et al.2026 · 0 citationsJournal of general internal medicine. 2026
Benchmarking Active Spot Selection for Cost-Efficient Spatial Transcriptomics.42818185 · Zhu, Zheyu, Zhu, Junchao, Liu, Fengbei et al.2026 · 0 citationsArXiv. 2026
AI-based detection of temporal changes in MR-Linac images acquired during routine prostate radiotherapy.42834946 · Park, Seungbin, Wang, Peilin, Paik, Joshua et al.2026 · 0 citationsPhysics and imaging in radiation oncology. 2026;41:101081
Mammography Foundation Models for Opportunistic Prediction of Major Adverse Cardiovascular Events2609.19385v1 · Paula Feldman, Nusrat Binta Nizam, Sunwoo Kwak et al.2026 · 0 citationsarXiv
Seeing Abnormal from Normal: Glomerular Abnormality in Representations of Normal Renal Morphology2609.19444v2 · Greta Hasko, Rachit Saluja, Tianyu Shi et al.2026 · 0 citationsarXiv
StainBridge: Stain-Aware Pairwise Registration of Serial Renal Biopsy Whole-Slide Images Across Structural and Immunohistochemical Stains2609.17090v1 · Ellen Wei, Bohang Jiang, Yanfan Zhu et al.2026 · 0 citationsarXiv
Identifying treatment-responsive patient subgroups in a neutral clinical trial of Intensive blood pressure reduction in acute intracerebral hemorrhage: A post hoc explainable machine learning analysis.42492370 · Tran, Anh T, Qureshi, Adnan I, Wen, Junhao et al.2026 · 0 citationsNeurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics. 2026;23(5):e00972
ShapKO: Shapley-Adaptive Modality Knockout for Robust Multimodal Learning2607.09884v1 · Nusrat Binta Nizam, Fengbei Liu, Sunwoo Kwak et al.2026 · 0 citationsarXiv
An artificial intelligence model to detect abnormal ejection fraction from non-contrast chest computed tomography: the CT-LVEF study.42388418 · Raikhelkar, Jayant, Bai, Zilong, Beecy, Ashley N et al.2026 · 2 citationsEuropean heart journal. Digital health. 2026;7(6):ztag088
A view-engage-predict framework for enhancing brain-behavior mapping with naturalistic movie-watching fMRI.42265316 · Zhang, Yunrui, Finn, Emily S, Sabuncu, Mert R et al.2026 · 0 citationsCommunications biology. 2026;9(1)
MAdam: Metric-Aware Multi-Objective Adam2606.03904v2 · Fengbei Liu, Rachit Saluja, Sunwoo Kwak et al.2026 · 0 citationsarXiv
MORI-Seg: Learning Morphological Geometry for Instance Segmentation without Instance Annotations2605.28261v1 · Leiyue Zhao, Tianyu Shi, Daniel Reisenbuchler et al.2026 · 0 citationsarXiv
Prediction of Rectal Cancer Regrowth from Longitudinal Endoscopy2605.12855v1 · Jorge Tapias Gomez, Despoina Kanata, Aneesh Rangnekar et al.2026 · 0 citationsarXiv
Network-Aware Bilinear Tokenization for Brain Functional Connectivity Representation Learning2605.14048v3 · Leo Milecki, Qingyu Hu, Bahram Jafrasteh et al.2026 · 0 citationsarXiv
Spectral Vision Transformer for Efficient Tokenization with Limited Data2605.12026v1 · Alexandra G. Roberts, Maneesh John, Jinwei Zhang et al.2026 · 0 citationsarXiv
Cardio amyloid-artificial intelligence: advanced multi-modal screening for transthyretin cardiac amyloidosis in severe aortic stenosis patients.42427357 · Nizam, Nusrat Binta, Beecy, Ashley N, Groenendyk, Jacob W et al.2026 · 1 citationEuropean heart journal. Digital health. 2026;7(6):ztag064
HyperCT: Low-Rank Hypernet for Unified Chest CT Analysis2604.03224v1 · Fengbei Liu, Sunwoo Kwak, Hao Phung et al.2026 · 0 citationsarXiv
Single-Subject Multi-View MRI Super-Resolution via Implicit Neural Representations2603.22627v2 · Heejong Kim, Abhishek Thanki, Roel van Herten et al.2026 · 0 citationsarXiv
BPD-Neo: An MRI Dataset for Lung-Trachea Segmentation with Clinical Data for Neonatal Bronchopulmonary Dysplasia.41820419 · Saluja, Rachit, Kovanlikaya, Arzu, Chien, Candace et al.2026 · 1 citationScientific data. 2026;13(1)
Author's Reply: Unrecognized Biases and Validation Gaps in TraceOrg for Automated Autosomal Dominant Polycystic Kidney Disease Volumetry.41563359 · Prince, Martin R, Blumenfeld, Jon D, Sabuncu, Mert R et al.2026 · 0 citationsJournal of the American Society of Nephrology : JASN. 2026;37(6):1363
Modality-agnostic, patient-specific digital twins modeling temporally varying digestive motion.41370930 · Gomez, Jorge Tapias, Nadkarni, Nishant, Bosma, Lando S et al.2026 · 2 citationsPhysics in medicine and biology. 2026;71(1)
Glo-VLMs: Leveraging Vision-Language Models for Fine-Grained Diseased Glomerulus Classification.42781586 · Guo, Zhenhao, Saluja, Rachit, Fang, Hongjin et al.2026 · 1 citationProceedings of SPIE--the International Society for Optical Engineering. 2026;13932
AtlasMorph: Learning conditional deformable templates for brain MRI.41604896 · Rakic, Marianne, Hoopes, Andrew, Abulnaga, Mazdak S et al.2026 · 1 citationMedical image analysis. 2026;110:103893
BackSplit: The Importance of Sub-dividing the Background in Biomedical Lesion Segmentation2511.19394v2 · Rachit Saluja, Asli Cihangir, Ruining Deng et al.2025 · 0 citationsarXiv
From Classification to Cross-Modal Understanding: Leveraging Vision-Language Models for Fine-Grained Renal Pathology2511.11984v2 · Zhenhao Guo, Rachit Saluja, Tianyu Shi et al.2025 · 0 citationsMachine.Learning.for.Biomedical.Imaging. 2026 (2026)
AI-assisted workflow enables rapid, high-fidelity breast cancer clinical trial eligibility prescreening2511.05696v1 · Jacob T. Rosenthal, Emma Hahesy, Sulov Chalise et al.2025 · 1 citationarXiv
Automatically Measuring Kidney, Liver, and Cyst Volumes in Autosomal Dominant Polycystic Kidney Disease.41186985 · Xiong, Qing, He, Xinzi, Scalco, Elisa et al.2026 · 4 citationsJournal of the American Society of Nephrology : JASN. 2026;37(5):995-1009
Comparing Handcrafted Radiomics Versus Latent Deep Learning Features of Admission Head CT for Hemorrhagic Stroke Outcome Prediction.41283322 · Tran, Anh T, Wen, Junhao, Abou Karam, Gaby et al.2025 · 3 citationsBiotech (Basel (Switzerland)). 2025;14(4)
Regularized CCA identifies sex-specific brain-behavior associations in adolescent psychopathology.41107246 · Milecki, Leo, Gonzalez, Camila, Adeli, Ehsan et al.2025 · 1 citationTranslational psychiatry. 2025;15(1):405
Beyond Grid-Locked Voxels: Neural Response Functions for Continuous Brain Encoding2510.07342v2 · Haomiao Chen, Keith W Jamison, Mert R. Sabuncu et al.2025 · 0 citationsarXiv
Technical Feasibility of Quantitative Susceptibility Mapping Radiomics for Predicting Deep Brain Stimulation Outcomes in Parkinson Disease.40965145 · Roberts, Alexandra G, Zhang, Jinwei, Tozlu, Ceren et al.2026 · 3 citationsNeurosurgery. 2026;98(5):1139-1148
Age-related changes of the brain's arterial network assessed with machine learning segmentation10.1101/2025.09.10.25335518v1 · Gomez, J. T., Saluja, R., Sabuncu, M. et al.2025 · 0 citationsmedRxiv
M^3-GloDets: Multi-Region and Multi-Scale Analysis of Fine-Grained Diseased Glomerular Detection2508.17666v1 · Tianyu Shi, Xinzi He, Kenji Ikemura et al.2025 · 1 citationarXiv
DyMorph-B2I: Dynamic and Morphology-Guided Binary-to-Instance Segmentation for Renal Pathology2508.15208v1 · Leiyue Zhao, Yuechen Yang, Yanfan Zhu et al.2025 · 1 citationarXiv
CoFi: A Fast Coarse-to-Fine Few-Shot Pipeline for Glomerular Basement Membrane Segmentation2508.11469v1 · Hongjin Fang, Daniel Reisenbuchler, Kenji Ikemura et al.2025 · 1 citationarXiv
Statistical variability in comparing accuracy of neuroimaging based classification models via cross validation.40769991 · Jafrasteh, Bahram, Adeli, Ehsan, Pohl, Kilian M et al.2025 · 6 citationsScientific reports. 2025;15(1):28745
View, engage, predict: enhancing brain-behavior mapping with naturalistic movie-watching fMRI10.1101/2025.07.28.666907v1 · Zhang, Y., Finn, E. S., Sabuncu, M. R. et al.2025 · 0 citationsbioRxiv
Generating Novel Brain Morphology by Deforming Learned Templates.40093358 · Wang, Alan Q, Huang, Fangrui, Trang, Bailey et al.2026 · 0 citationsArXiv. 2025
Cancer type, stage and prognosis assessment from pathology reports using LLMs.40715326 · Saluja, Rachit, Rosenthal, Jacob, Windon, Annika et al.2025 · 8 citationsScientific reports. 2025;15(1):27300
Knockout: A simple way to handle missing inputs.41552269 · Nguyen, Minh, Karaman, Batuhan K, Kim, Heejong et al.2026 · 1 citationTransactions on machine learning research. 2025;2025
RealKeyMorph: Keypoints in Real-world Coordinates for Resolution-agnostic Image Registration2506.10344v2 · Mina C. Moghadam, Alan Q. Wang, Omer Taub et al.2025 · 0 citationsarXiv
Krakencoder: a unified brain connectome translation and fusion tool.40473984 · Jamison, Keith W, Gu, Zijin, Wang, Qinxin et al.2025 · 8 citationsNature methods. 2025;22(7):1583-1592
IRS: Incremental Relationship-guided Segmentation for Digital Pathology2505.22855v1 · Ruining Deng, Junchao Zhu, Juming Xiong et al.2025 · 0 citationsarXiv
Rethinking clinical trials for medical AI with dynamic deployments of adaptive systems.40328886 · Rosenthal, Jacob T, Beecy, Ashley, Sabuncu, Mert R2025 · 59 citationsNPJ digital medicine. 2025;8(1):252
Fine-tuning Vision Language Models with Graph-based Knowledge for Explainable Medical Image Analysis2503.09808v2 · Chenjun Li, Laurin Lux, Alexander H. Berger et al.2025 · 1 citationarXiv
Learning-based inference of longitudinal image changes: Applications in embryo development, wound healing, and aging brain.39977323 · Kim, Heejong, Karaman, Batuhan K, Zhao, Qingyu et al.2025 · 7 citationsProceedings of the National Academy of Sciences of the United States of America. 2025;122(8):e2411492122
CASC-AI: Consensus-aware Self-corrective Learning for Noise Cell Segmentation2502.07302v2 · Ruining Deng, Yihe Yang, David J. Pisapia et al.2025 · 0 citationsarXiv
A Deep-Learning Model for Multi-class Audio Classification of Vocal Fold Pathologies in Office Stroboscopy.39907244 · Kim, Yeo E, Dobko, Maria, Li, Haomiao et al.2025 · 9 citationsThe Laryngoscope. 2025;135(7):2428-2436
Quantitative Susceptibility Mapping Radiomics with Label Noise Compensation for Predicting Deep Brain Stimulation Outcomes in Parkinson's Disease10.1101/2024.12.26.24319663v1 · Roberts, A. G., Zhang, J., Tozlu, C. et al.2024 · 1 citationmedRxiv
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