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Doubly Robust Deep Kernel Tests for Structured Outcomes

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Abstract

We propose a test of whether two interventions induce the same outcome distribution when outcomes are structured and high-dimensional, such as images, text and graphs. We represent the interventional distributions as mean embeddings on learned deep features, such that the treatment effect is a doubly robust representation of the difference in mean embeddings. Our test, DR-KTE-Deep, optimises the learned features so as to maximise an estimated power criterion on this treatment effect representation. To motivate our learning objective, we show that the power criterion characterises the asymptotic signal-to-noise ratio of the test under fixed alternatives, and we derive a uniform finite-sample bound for its regularised estimate. We show that, with the learned kernel fixed, a held-out test is asymptotically valid under the null given suitable nuisance-estimation rates. Empirically, DR-KTE-Deep achieves substantially higher power than fixed and bandwidth-optimised kernel baselines across image, text and graph outcomes, while maintaining well-calibrated Type-I error.

Introduction

In causal problems involving structured and high-dimensional outcomes, such as images, text, and graphs, a mean outcome may be undefined or poorly aligned with the structure of the data. For example, comparing protein or text sequences requires choosing a numerical representation or a notion of similarity [50, 35, 46] and comparing images with coordinate-wise averaging ignores the spatial structure of the data [32]. Distributional causal inference addresses this by defining the interventional distributions directly on the structured outcome space, without reducing outcomes to an arbitrary scalar summary or notion of averaging [48, 11, 28, 40]. Kernels define similarities on these spaces [17, 6, 53] and, through kernel mean embeddings, represent interventional distributions in a reproducing kernel Hilbert space (RKHS) [57].

Kernels define the geometry used to compare outcome distributions [59, 54, 18]. If this geometry is fixed a priori, the kernel may be poorly suited to detecting differences between the interventional distributions, leading to low test power [19, 60]. Deep kernels address this by using neural networks to learn a representation of the outcomes and compare distributions in the resulting space [64]. Rather than learning this representation through a reconstruction task, the learned kernel can be optimised by directly maximising a test-power criterion [60].

We consider two soft interventions π\pi and π′\pi' inducing the outcome distributions PYπP_Y^\pi and PYπ′P_Y^{\pi'}. Determining whether an intervention changes the outcome distribution can be formulated as a hypothesis testing problem, testing H0:PYπ=PYπ′H_0 : P_Y^\pi= P_Y^{\pi'} against H1:PYπ≠PYπ′H_1 : P_Y^\pi\ne P_Y^{\pi'}.

Treatment effects often need to be estimated from observational data, because experimentation can be costly, unethical or infeasible. In this setting, interventional distributions are not directly observed and must be recovered [47, 22, 40, 69]. This can be done by estimating either treatment assignment or the conditional outcome embedding [58, 21]. However, either approach alone is sensitive to model misspecification. We therefore use a doubly robust estimator, which combines both approaches and remains consistent when either model is correctly specified [3, 36].

In this paper, we introduce DR-KTE-Deep, which combines doubly robust interventional embeddings with deep kernel learning and testing. Our main contributions are: (i) we develop a method for learning deep kernels for tests of interventional distributions, estimating both the distributional discrepancy and the test-power criterion from observational data; (ii) we derive a uniform finite-sample bound for the estimated learning criterion, accounting for both kernel-class complexity and errors in estimating the treatment-assignment and outcome models; (iii) we establish conditional asymptotic validity of the held-out test after nuisance estimation and kernel training and selection; and (iv) we evaluate the method on image, text, and graph outcomes, showing substantial power gains over fixed and bandwidth-optimised doubly robust kernel tests, while maintaining Type-I error close to the nominal level.

The remainder of the paper is organised as follows. Section 3 develops the doubly robust test. Section 4 develops the deep-kernel learning objective. Section 5 evaluates its power and calibration across image, text, and graph outcomes. Section 6 concludes.

Related Work

Several works study distributional causal effects. Quantile treatment effects characterise changes across an ordered outcome distribution [1, 10, 16], while counterfactual distribution and density methods target the full marginal law [48, 11, 28]. These methods are typically developed for scalar or finite-dimensional Euclidean outcomes. We instead consider structured outcomes whose interventional distributions must be compared without reducing them to low-dimensional summaries.

Kernel mean embeddings represent interventional outcome distributions in an RKHS. Muandet et al. [40] introduce counterfactual mean embeddings, while Park et al. [45], Nâf et al. [41], and Jain & Luedtke [25] use kernel methods to study conditional distributional treatment effects. For marginal effects, Fawkes et al. [15] and Martinez-Taboada et al. [38] develop doubly robust kernel tests, and Zenati et al. [69] extend them to general stochastic policies. Finally, Zenati et al. [70] further consider adaptively collected data. These methods use prescribed outcome kernels, including aggregation over kernel bandwidths, without learning a deep outcome representation. A separate literature uses kernels to estimate causal mean functions through kernel ridge regression [56, 30], instrumental variable regression [55, 39], and proxy bridge learning [7, 8]. These approaches use kernels or learned representations for causal function estimation, rather than for comparing interventional outcome distributions.

Other work adapts the kernel or outcome representation to improve test power. Gretton et al. [20] optimise the power of linear-time MMD tests over kernel mixtures and analyse convergence of the selection criterion. Sutherland et al. [60] optimise kernel parameters for two-sample tests, while Liu et al. [33] learn characteristic deep kernels and prove uniform convergence of their learning criterion. Other approaches combine multiple kernels through aggregation or fusion [51, 5]. In causal settings, Zenati & Gretton (2026) learn informative witness locations for distributional treatment effects, while Wibisono & Wang [62] and Durand et al. [13] learn outcome features or projections to detect causal effects. Our method instead learns the outcome kernel for an omnibus test of marginal interventional distributions. We estimate the learning criterion from observational data using causal nuisance models and analyse how errors in these models affect the criterion.

Doubly Robust Kernel Test

Problem Setting. We are given an observational dataset D\mathcal{D} of NN independent and identically distributed (i.i.d.) samples O1,…,ON∼i.i.d.P0O_1,\ldots,O_N \overset{\mathrm{i.i.d.}}{\sim} \mathbb{P}_0, where Oi=(Xi,Ai,Yi)∈X×A×YO_i=(X_i,A_i,Y_i)\in\mathcal{X}\times\mathcal{A}\times\mathcal{Y}. X\mathcal{X}, A\mathcal{A}, and Y\mathcal{Y} are standard Borel spaces. Write PX\mathbb{P}_{X} for the XX-marginal of P0\mathbb{P}_0, and PA,X\mathbb{P}_{A,X} for its treatment-covariate marginal. Let ρ\rho be a σ\sigma-finite reference measure on A\mathcal{A}. The logging policy assigns A∣X=xA\mid X=x with density π0(⋅∣x)\pi_0(\cdot\mid x) relative to ρ\rho. We consider a unit-level potential-outcome setting with no interference between units [49, 23]. We compare two soft interventions π\pi and π′\pi' with conditional densities π(⋅∣x)\pi(\cdot\mid x) and π′(⋅∣x)\pi'(\cdot\mid x) respectively.

Identification. The observational data are generated under the logging policy π0\pi_0, whereas the targets we consider are the outcome distributions under π\pi and π′\pi'. To identify these distributions, we work under the standard assumption that the treatment assignment is unconfounded given the observed covariates, and that the interventions assign only treatments supported by the logging policy. We formalise these conditions through the common assumptions below.

Assumption 3.1 (Identification). There exist a standard Borel space U\mathcal{U}, a U\mathcal{U}-valued random variable UU, and a jointly measurable map F:A×X×U→YF:\mathcal{A}\times\mathcal{X}\times\mathcal{U}\to\mathcal{Y} such that:

  1. Consistency and structural response: Y=F(A,X,U)Y=F(A,X,U) almost surely; for every a∈Aa\in\mathcal{A}, define Ya:=F(a,X,U)Y^a:=F(a,X,U).

  2. Conditional exogeneity: U⊥ ⁣ ⁣ ⁣⊥A∣XU\perp\!\!\!\perp A\mid X.

  3. Positivity on intervention support: π0(a∣x)>0\pi_0(a\mid x)>0 whenever π(a∣x)+π′(a∣x)>0\pi(a\mid x)+\pi'(a\mid x)>0, up to a PX⊗ρ\mathbb{P}_X\otimes\rho-null set.

For p∈{π,π′}p\in\{\pi,\pi'\}, draw Ap∣XA^p\mid X with density p(⋅∣X)p(\cdot\mid X) independently of UU given XX, and define Yp:=F(Ap,X,U)Y^p:=F(A^p,X,U) and PYp:=L(Yp)P_Y^p:=\mathcal{L}(Y^p). We test H0:PYπ=PYπ′H_0:P_Y^\pi=P_Y^{\pi'} against H1:PYπ≠PYπ′H_1:P_Y^\pi\ne P_Y^{\pi'}.

Let Q(⋅∣a,x)Q(\cdot\mid a,x) denote an observational conditional distribution of YY given (A,X)=(a,x)(A,X)=(a,x). Under Assumption 3.1, the intervention changes the treatment assignment mechanism while preserving the conditional outcome response. The interventional outcome distribution is then identified by the g-formula Robins, [47]; Hernán & Robins [22]:

PYp(B)=∫X∫AQ(B∣a,x)p(a∣x)ρ(da)PX(dx),P_Y^p(B) = \int_{\mathcal{X}} \int_{\mathcal{A}} Q(B \mid a,x)p(a \mid x)\rho(\mathrm{d}a)P_X(\mathrm{d}x),

for every measurable B⊆YB \subseteq\mathcal{Y}.

This formula averages the conditional outcome distributions over the treatments assigned by pp and the covariate distribution of the population. Positivity ensures that this average only involves treatment-covariate pairs supported by the observational data. We establish these claims in Proposition B.1.

Kernel Formulation. To compare distributions over structured outcomes, we represent them as elements of an RKHS. Let Θ⊆RdΘ\Theta\subseteq\mathbb{R}^{d_\Theta} be a non-empty parameter set. For each θ∈Θ\theta\in\Theta, let kθ:Y×Y→Rk_\theta: \mathcal{Y} \times\mathcal{Y} \to\mathbb{R} be a positive-semidefinite kernel on Y\mathcal{Y} parameterised by θ\theta with separable RKHS Hθ\mathcal{H}_\theta and strongly measurable canonical feature map φθ(y):=kθ(y,⋅)\varphi_\theta(y) := k_\theta(y,\cdot).

We define the interventional mean embedding [40, 69], embedding contrast, and squared maximum mean discrepancy (MMD) [19] respectively by

χθ(p):=∫Yφθ(y)PYp(dy),Δθ(π,π′):=χθ(π)−χθ(π′),Dθ(π,π′):=∥Δθ(π,π′)∥Hθ2.\chi_\theta(p) := \int_{\mathcal{Y}} \varphi_\theta(y)P_Y^p(\mathrm{d}y), \qquad\Delta_\theta(\pi,\pi') := \chi_\theta(\pi) - \chi_\theta(\pi'), \qquad D_\theta(\pi,\pi') := \|\Delta_\theta(\pi,\pi')\|_{\mathcal{H}_\theta}^2.

Assumption 3.2 (Embedding integrability). For every θ∈Θ\theta\in\Theta and p∈{π,π′}p \in\{\pi,\pi'\}, assume EP0kθ(Y,Y)<∞\mathbb{E}_{P_0}\sqrt{k_\theta(Y,Y)} < \infty and ∫Ykθ(y,y)PYp(dy)<∞\int_{\mathcal{Y}}\sqrt{k_\theta(y,y)}P_Y^p(\mathrm{d}y) < \infty. These first moments ensure Bochner integrability under the observed and interventional laws.

If kθk_\theta is characteristic, testing H0H_0 is equivalent to testing Dθ(π,π′)=0D_\theta(\pi,\pi') = 0 [19 Section 2.2].

Doubly Robust Representation. To estimate Dθ(π,π′)D_\theta(\pi,\pi') from observational data, we construct a doubly robust representation of the embedding contrast Δθ(π,π′)\Delta_\theta(\pi,\pi'), following Zenati et al. [69]. We further compare the choice of estimator in Section D.4.

For a fixed θ∈Θ\theta\in\Theta, define the conditional outcome mean embedding [21] by

μθ(a,x):=∫Yφθ(y)Q(dy∣a,x).\mu_\theta(a,x) := \int_{\mathcal{Y}} \varphi_\theta(y)Q(\mathrm{d}y \mid a,x).

We use the null-set convention described in Section B.1. This embedding satisfies μθ(A,X)=EP0[φθ(Y)∣A,X]\mu_\theta(A,X) = \mathbb{E}_{P_0}[\varphi_\theta(Y) \mid A,X] almost surely. For ease of notation, write r(a,x):=π(a∣x)−π′(a∣x)r(a,x) := \pi(a \mid x)-\pi'(a \mid x). Let ee be a measurable candidate logging-policy density that is positive wherever ∣r∣>0|r| > 0. Let mθm_\theta be a measurable candidate conditional outcome embedding. We set ratios and integrands weighted by rr or ∣r∣|r| to zero where r=0r = 0.

Define the Hilbert-valued pseudo-feature map

gθπ,π′(O;e,mθ):=r(A,X)e(A∣X){φθ(Y)−mθ(A,X)}+∫Ar(a,X)mθ(a,X)ρ(da).(1)g_\theta^{\pi,\pi'}(O;e,m_\theta) := \frac{r(A,X)}{e(A \mid X)}\{\varphi_\theta(Y)-m_\theta(A,X)\}+\int_{\mathcal{A}}r(a,X)m_\theta(a,X)\rho(\mathrm{d}a). \tag*{(1)}

The second term estimates the embedding contrast through the conditional outcome model, while the first corrects it using propensity-weighted outcome residuals.

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